Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1177373525
rs1177373525
0.010 GeneticVariation BEFREE The novel homozygous p.M797I POLG mutation is responsible for MNGIE combined to optic atrophy and mtDNA depletion in the two patients. 30395865

2019

dbSNP: rs397514477
rs397514477
0.010 GeneticVariation BEFREE We compared the most frequent mutations, p.Thr11Met and p.Gly69ArgfsX10; the latter was associated with younger age at onset and more frequent optic atrophy in homozygotes. 30088953

2018

dbSNP: rs1231502335
rs1231502335
0.010 GeneticVariation BEFREE We also identified a novel mutation causing optic atrophy and deafness (c.892A>G (p.Ser298Gly)). 27858935

2017

dbSNP: rs746681765
rs746681765
0.010 GeneticVariation BEFREE While the previously reported variant p.Arg340Cys seems to be consistently associated with the same clinical features such as childhood onset, optic atrophy, gait and speech difficulties, and wasting of the lower limbs, the patient with the novel mutation p.Trp160Ser did not present with optic atrophy and his ocular abnormalities were limited to nystagmus and saccadic pursuit. 28558379

2017

dbSNP: rs587777175
rs587777175
TFG
0.010 GeneticVariation BEFREE The second carried the same homozygous c.316C>T (p.R106C) variant previously reported and displayed a similarly complex phenotype including optic atrophy. 27492651

2016

dbSNP: rs201754030
rs201754030
0.010 GeneticVariation BEFREE The same p.Q286X variant was found as compound heterozygous with a splice site change in a patient from a second family, with juvenile-onset optic atrophy, peripheral neuropathy, and ataxia. 25037205

2014

dbSNP: rs104894270
rs104894270
0.010 GeneticVariation BEFREE The combined mutation (T145I + R199W) in the subunit is reported to cause optic atrophy and Leigh syndrome accompanied by severe Complex-I deficiency. 24028823

2013

dbSNP: rs28939714
rs28939714
0.010 GeneticVariation BEFREE The combined mutation (T145I + R199W) in the subunit is reported to cause optic atrophy and Leigh syndrome accompanied by severe Complex-I deficiency. 24028823

2013

dbSNP: rs2157719
rs2157719
0.010 GeneticVariation BEFREE Both NPG loci were also nominally associated with a second type of glaucoma, exfoliation syndrome glaucoma (rs2157719 [G], OR = 0.59 [95% CI 0.41-0.87], p = 0.004 and rs284489 [G], OR = 0.76 [95% CI 0.54-1.06], p = 0.021), suggesting that these loci might contribute more generally to optic nerve degeneration in glaucoma. 22570617

2012

dbSNP: rs284489
rs284489
0.010 GeneticVariation BEFREE Both NPG loci were also nominally associated with a second type of glaucoma, exfoliation syndrome glaucoma (rs2157719 [G], OR = 0.59 [95% CI 0.41-0.87], p = 0.004 and rs284489 [G], OR = 0.76 [95% CI 0.54-1.06], p = 0.021), suggesting that these loci might contribute more generally to optic nerve degeneration in glaucoma. 22570617

2012

dbSNP: rs151103940
rs151103940
0.010 GeneticVariation BEFREE An OPA1 missense mutation, c.239A→G (p.Y80C), was identified in an 11-year-old black girl with optic atrophy and peripheral sensorimotor neuropathy in her lower limbs. 21036400

2011

dbSNP: rs80356524
rs80356524
0.010 GeneticVariation BEFREE In contrast, overexpression of a familial OPA3 mutant (G93S) induced mitochondrial fragmentation and spontaneous apoptosis, suggesting that OPA3 mutations may cause optic atrophy via a gain-of-function mechanism. 20372962

2010

dbSNP: rs74315205
rs74315205
0.010 GeneticVariation BEFREE This pedigree, in which the proband had non-insulin-dependent diabetes mellitus and congenital hearing impairment and his mother a triple combination of diabetes mellitus, hearing impairment and optic atrophy, was found to be associated with autosomal dominant transmission of the E864K mutation of the WFS1 gene. 18544103

2008

dbSNP: rs104893753
rs104893753
0.010 GeneticVariation BEFREE The mutations (Glu347Stop and Arg366Stop) of the OPA1 gene are involved in the pathogenesis of bilateral optic atrophy in Japanese patients. 12842213

2003

dbSNP: rs119103265
rs119103265
0.020 GeneticVariation BEFREE The patient is a Caucasian male with HMSN VI (type 2A Charcot-Marie-Tooth disease and associated optic atrophy) and a c.1090C→T (p.R364W) mutation in the mitofusin 2 (MFN2) gene. 21707411

2011

dbSNP: rs387906930
rs387906930
0.020 GeneticVariation BEFREE Among these families, we found three heterozygous missense mutations in WFS1 segregating with OA and SNHL: p.A684V (six families), and two novel mutations, p.G780S and p.D797Y, all involving evolutionarily conserved amino acids and absent from 298 control chromosomes. 21538838

2011

dbSNP: rs387906930
rs387906930
0.020 GeneticVariation BEFREE Their father has congenital sensorineural hearing loss and developed optic atrophy.He is heterozygous for A684V in WFS1. 21067485

2010

dbSNP: rs119103265
rs119103265
0.020 GeneticVariation BEFREE We identified two HMSN VI families with the R364W mutation in the early onset group; however, two other families with the same mutation did not have optic atrophy. 16835246

2006

dbSNP: rs80356529
rs80356529
0.030 GeneticVariation BEFREE In contrast, the association of autosomal dominant OA and SNHL without other phenotypic abnormalities is rare, and almost exclusively attributed to mutations in the Optic Atrophy-1 gene (OPA1), most commonly the p.R445H mutation. 21538838

2011

dbSNP: rs80356529
rs80356529
0.030 GeneticVariation BEFREE OPA1 R445H mutation in optic atrophy associated with sensorineural deafness. 16240368

2005

dbSNP: rs80356529
rs80356529
0.030 GeneticVariation BEFREE One patient with optic atrophy had a heterozygous Arg445His mutation in the OPA1 gene. 12566046

2003

dbSNP: rs1555817157
rs1555817157
A 0.700 CausalMutation CLINVAR Phenotypical features of two patients diagnosed with PHARC syndrome and carriers of a new homozygous mutation in the ABHD12 gene. 29571850

2018

dbSNP: rs779027563
rs779027563
C 0.700 GeneticVariation CLINVAR Novel mutation in CNTNAP1 results in congenital hypomyelinating neuropathy. 27668699

2017

dbSNP: rs1057517686
rs1057517686
T 0.700 GeneticVariation CLINVAR We identified a recurrent de novo ATAD3A c.1582C>T (p.Arg528Trp) variant by whole-exome sequencing (WES) in five unrelated individuals with a core phenotype of global developmental delay, hypotonia, optic atrophy, axonal neuropathy, and hypertrophic cardiomyopathy. 27640307

2016

dbSNP: rs374997012
rs374997012
T 0.700 GeneticVariation CLINVAR Infantile onset spinocerebellar ataxia caused by compound heterozygosity for Twinkle mutations and modeling of Twinkle mutations causing recessive disease. 27551684

2016