Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE TNFAIP3 F127C Coding Variation in Greek Primary Sjogren's Syndrome Patients. 30662920

2018

dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE In both cohorts, the rs2230926 missense polymorphism was not associated with pSS. 26338037

2016

dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE The rs2230926 exonic variant was associated with an increased risk for pSS complicated by lymphoma (odds ratio, 3.36 [95% confidence interval, 1.34-8.42], and odds ratio, 3.26 [95% confidence interval, 1.31-8.12], vs controls and pSS patients without lymphoma, respectively; P = .011). 24159176

2013

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE Our meta-analysis revealed that the STAT4 rs7574865 polymorphism is associated with four autoimmune diseases with systemic pathology, including systemic lupus erythematosus (OR = 1.52; 95% CI = 1.48 - 1.56, P<1.0 × 10(-16)), rheumatoid arthritis (OR = 1.27; 95% CI = 1.21 - 1.33, P < 1.00 × 10(-16)), systemic sclerosis (OR = 1.38; 95% CI = 1.27 - 1.50, P < 1.44 × 10(-14)), and primary Sjogren's syndrome (OR = 1.32; 95% CI = 1.01 - 1.73, P = 4.40 × 10(-2)), while no association was found with type I diabetes, juvenile idiopathic arthritis, ulcerative colitis and Crohn's disease. 23628400

2013

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE The overall odds ratios for rs7574865 T-allele significantly increased in SLE, RA, T1D, SSc, JIA, and APS (OR = 1.56, 1.25, 1.13, 1.34, 1.25, and 2.15, respectively, P < 0.00001) and in IBD-UC and pSS (OR = 1.11 and 1.33, respectively, P < 0.05). 22714917

2012

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE To examine the influence of STAT4 rs7574865 gene polymorphism on patients with primary Sjögren's syndrome (SS). 20360187

2010

dbSNP: rs117026326
rs117026326
0.020 GeneticVariation BEFREE Genetic variant rs117026326 upstream of the general transcription factor II-I (GTF2I) has been associated with primary Sjögren's syndrome, SLE and RA in East Asian populations. 31520790

2019

dbSNP: rs2736340
rs2736340
0.020 GeneticVariation BEFREE Stratification analysis by diseases suggested FAM167A-BLK rs2736340 had a positive association with rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), systemic sclerosis (SSc) and Kawasaki disease, primary Sjogren's syndrome (pSS), primary antiphosholipid syndrome (APS), and myositis. 27105348

2016

dbSNP: rs117026326
rs117026326
0.020 GeneticVariation BEFREE The combined analysis identified GTF2I at 7q11.23 (rs117026326: Pcombined = 1.31 × 10(-53), combined odds ratio (ORcombined) = 2.20) as a new susceptibility locus for primary Sjögren's syndrome. 24097066

2013

dbSNP: rs2736340
rs2736340
0.020 GeneticVariation BEFREE Our results indicated that the SNPs (rs2736340, rs13277113) of the FAM167A-BLK region, but not the BANK1 SNPs (rs4522865, rs17266594, and rs10516487), were associated with the development of pSS in Han Chinese. 23899688

2013

dbSNP: rs3135945
rs3135945
0.010 GeneticVariation BEFREE Three single nucleotide polymorphisms (SNPs) of the TREX1 gene (rs11797, rs3135941 and rs3135945) were evaluated in 229 SS, 89 SS-lymphoma (70 SS-MALT and 19 SS non-MALT) and 240 healthy controls by PCR-based assays. 31326279

2019

dbSNP: rs485497
rs485497
0.010 GeneticVariation BEFREE We confirmed association of the IL12A rs485497 polymorphism and pSS and found an increased serum protein level of IL-12p70 in patients with pSS carrying the risk allele (P = .016). 28916184

2018

dbSNP: rs10817595
rs10817595
0.010 GeneticVariation BEFREE <i>HIF1A</i> (rs11549465) and <i>AKNA</i> (rs10817595) Gene Polymorphisms Are Associated with Primary Sjögren's Syndrome. 28484714

2017

dbSNP: rs11549465
rs11549465
0.010 GeneticVariation BEFREE We identified <i>HIF1A Pro582Ser T</i> allele and <i>C</i>/<i>T</i> genotype as well as <i>AKNA -1372C>A</i> polymorphism A/A genotype as genetic factors associated with pSS. 28484714

2017

dbSNP: rs1217691063
rs1217691063
0.010 GeneticVariation BEFREE Αnalysis according to lymphoma subtype revealed increased frequency of c. 677C > T TT genotype and T allele, as well as reduced prevalence of the c. 1298A > C C allele in the pSS non-MALT group compared to controls and patients without NHL. 28779180

2017

dbSNP: rs13447
rs13447
0.010 GeneticVariation BEFREE We show that the p.Arg90His substitution, which is reported to cause reduced reactive oxygen species (ROS) production, predisposes to SLE (odds ratio (OR) = 3.47 in Asians (P<sub>meta</sub> = 3.1 × 10<sup>-104</sup>), OR = 2.61 in European Americans, OR = 2.02 in African Americans) and other autoimmune diseases, including primary Sjögren's syndrome (OR = 2.45 in Chinese, OR = 2.35 in European Americans) and rheumatoid arthritis (OR = 1.65 in Koreans). 28135245

2017

dbSNP: rs1376314937
rs1376314937
0.010 GeneticVariation BEFREE We identified <i>HIF1A Pro582Ser T</i> allele and <i>C</i>/<i>T</i> genotype as well as <i>AKNA -1372C>A</i> polymorphism A/A genotype as genetic factors associated with pSS. 28484714

2017

dbSNP: rs201802880
rs201802880
0.010 GeneticVariation BEFREE We show that the p.Arg90His substitution, which is reported to cause reduced reactive oxygen species (ROS) production, predisposes to SLE (odds ratio (OR) = 3.47 in Asians (P<sub>meta</sub> = 3.1 × 10<sup>-104</sup>), OR = 2.61 in European Americans, OR = 2.02 in African Americans) and other autoimmune diseases, including primary Sjögren's syndrome (OR = 2.45 in Chinese, OR = 2.35 in European Americans) and rheumatoid arthritis (OR = 1.65 in Koreans). 28135245

2017

dbSNP: rs2839698
rs2839698
0.010 GeneticVariation BEFREE H19 rs2839698 was not associated with SLE susceptibility and was not associated with RA and pSS, respectively (P > 0.05). 28914367

2017

dbSNP: rs397507444
rs397507444
0.010 GeneticVariation BEFREE Αnalysis according to lymphoma subtype revealed increased frequency of c. 677C > T TT genotype and T allele, as well as reduced prevalence of the c. 1298A > C C allele in the pSS non-MALT group compared to controls and patients without NHL. 28779180

2017

dbSNP: rs4917014
rs4917014
0.010 GeneticVariation BEFREE To investigate the possibility of an association between the IKZF1 locus and pSS, we selected two single nucleotide polymorphisms (SNPs) in the IKZF1 locus, rs4917129 and rs4917014, based on a detailed analysis of genome-wide association study (GWAS) data and performed genotyping in 665 Han Chinese pSS patients and 863 healthy controls. 28552951

2017

dbSNP: rs4917129
rs4917129
0.010 GeneticVariation BEFREE To investigate the possibility of an association between the IKZF1 locus and pSS, we selected two single nucleotide polymorphisms (SNPs) in the IKZF1 locus, rs4917129 and rs4917014, based on a detailed analysis of genome-wide association study (GWAS) data and performed genotyping in 665 Han Chinese pSS patients and 863 healthy controls. 28552951

2017

dbSNP: rs10840759
rs10840759
0.010 GeneticVariation BEFREE There is no association between rs10840759 and SLE or primary SS. 26429306

2015

dbSNP: rs2377422
rs2377422
0.010 GeneticVariation BEFREE In conclusion, DCIR SNP rs2377422 is a novel genetic susceptibility factor for both SLE and primary SS. 26429306

2015

dbSNP: rs12583006
rs12583006
0.010 GeneticVariation BEFREE The low risk pSS group exhibited higher frequency of the minor A allele and AA genotype of the rs12583006 variant compared to HC. 23845207

2014