Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE BRAF(V600E) and microenvironment in thyroid cancer: a functional link to drive cancer progression. 21447745

2011

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE BRAF(V600E) and microenvironment in thyroid cancer: a functional link to drive cancer progression. 21447745

2011

dbSNP: rs121913529
rs121913529
0.050 GeneticVariation BEFREE We hypothesized that tumor progression was because of concomitant activation of the mitogen-activated protein kinase pathway downstream of Kras(G12D) expression promoting cell survival and that the therapeutic effect of PF-04691502 would be enhanced by combinatory inhibition of MEK using PD-0325901. 21632463

2011

dbSNP: rs121913529
rs121913529
0.050 GeneticVariation BEFREE The transformed phenotype of IOE(CMYC) cells was further enhanced in concert with KRAS(G12V)/BRAF(V600E) expression, as in vitro analyses indicated that IOE(CMYC) cells had undergone morphological and phenotypic changes characteristic of neoplastic progression. 21859834

2011

dbSNP: rs1284806277
rs1284806277
MOK
0.020 GeneticVariation BEFREE Besides earlier described DNA methylation, recent studies implicate bone morphogenic protein and non-steroidal anti-inflammatory drugs in control of S100P expression during tumor progression. 20155429

2011

dbSNP: rs752021744
rs752021744
0.020 GeneticVariation BEFREE We hypothesized that tumor progression was because of concomitant activation of the mitogen-activated protein kinase pathway downstream of Kras(G12D) expression promoting cell survival and that the therapeutic effect of PF-04691502 would be enhanced by combinatory inhibition of MEK using PD-0325901. 21632463

2011

dbSNP: rs104894230
rs104894230
0.010 GeneticVariation BEFREE The transformed phenotype of IOE(CMYC) cells was further enhanced in concert with KRAS(G12V)/BRAF(V600E) expression, as in vitro analyses indicated that IOE(CMYC) cells had undergone morphological and phenotypic changes characteristic of neoplastic progression. 21859834

2011

dbSNP: rs1285136498
rs1285136498
0.010 GeneticVariation BEFREE Besides earlier described DNA methylation, recent studies implicate bone morphogenic protein and non-steroidal anti-inflammatory drugs in control of S100P expression during tumor progression. 20155429

2011

dbSNP: rs1418810723
rs1418810723
FN1
0.010 GeneticVariation BEFREE BRAF(V600E) and microenvironment in thyroid cancer: a functional link to drive cancer progression. 21447745

2011

dbSNP: rs438034
rs438034
0.010 GeneticVariation BEFREE In addition, the 52 single nucleotide polymorphisms associated at P<10(-4) included rs438034 (CENPF; P=4.86×10(-6)), previously correlated with cancer progression, and rs2255235 (B2M; P=3.10×10(-5)) and rs2064501 (IL22RA2; P=4.81×10(-5)) which map to B-cell genes. 21659360

2011

dbSNP: rs4986790
rs4986790
0.010 GeneticVariation BEFREE TLR4-D299G induces features of neoplastic progression in intestinal epithelial Caco-2 cells and associates with aggressive colon cancer in humans, implying a novel link between aberrant innate immunity and colonic cancerogenesis. 21920464

2011

dbSNP: rs4986791
rs4986791
0.010 GeneticVariation BEFREE Caco-2 cells that expressed TLR4-D299G underwent the epithelial-mesenchymal transition and morphologic changes associated with tumor progression, whereas cells that expressed wild-type TLR4 or TLR4-T399I did not. 21920464

2011

dbSNP: rs727503094
rs727503094
0.010 GeneticVariation BEFREE The transformed phenotype of IOE(CMYC) cells was further enhanced in concert with KRAS(G12V)/BRAF(V600E) expression, as in vitro analyses indicated that IOE(CMYC) cells had undergone morphological and phenotypic changes characteristic of neoplastic progression. 21859834

2011

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Oncogenic B-RAF V600E mutation is found in 50% of melanomas and drives MEK/ERK pathway and cancer progression. 22730329

2012

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Correspondingly, in established murine BRAF(V600E)-driven nevi, acute shRNA-mediated depletion of PTEN prompted tumor progression. 22549727

2012

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE Oncogenic B-RAF V600E mutation is found in 50% of melanomas and drives MEK/ERK pathway and cancer progression. 22730329

2012

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE Correspondingly, in established murine BRAF(V600E)-driven nevi, acute shRNA-mediated depletion of PTEN prompted tumor progression. 22549727

2012

dbSNP: rs121913529
rs121913529
0.050 GeneticVariation BEFREE Other organs such as pancreas, liver, and small intestine do not exhibit neoplastic progression within 6 weeks following K-Ras(G12D) activation and do not show a potent tumor suppressor response. 22532587

2012

dbSNP: rs752021744
rs752021744
0.020 GeneticVariation BEFREE Additionally, we tested efficacy of PD-0325901 in Kras(G12D-LSL) conditional GEMMs (genetically engineered mouse models) which are a valuable tool in translational research to study tumor progression. 22684718

2012

dbSNP: rs762846821
rs762846821
0.020 GeneticVariation BEFREE The concomitant expression of oncogenic Kras(G12D) and mutant p53 (Trp53(R172H)) in the murine pancreas results in metastatic PDA that recapitulates the cognate features of human pancreatic cancer providing an excellent animal model to identify genes required for tumor progression. 22158044

2012

dbSNP: rs10009228
rs10009228
0.010 GeneticVariation BEFREE A SNP in the alpha9 subunit, the G allele of rs10009228 (alpha9, A>G) shows a significant trend in the combined cohort, indicating that this allele constitutes a risk factor for neoplastic progression. 22406075

2012

dbSNP: rs1057519847
rs1057519847
0.010 GeneticVariation BEFREE Haploinsufficiency of Nkx2-1 enhanced Kras(G12D)-mediated tumor progression, but reduced EGFR(L858R)-mediated progression. 23143308

2012

dbSNP: rs1057519848
rs1057519848
0.010 GeneticVariation BEFREE Haploinsufficiency of Nkx2-1 enhanced Kras(G12D)-mediated tumor progression, but reduced EGFR(L858R)-mediated progression. 23143308

2012

dbSNP: rs121434568
rs121434568
0.010 GeneticVariation BEFREE Haploinsufficiency of Nkx2-1 enhanced Kras(G12D)-mediated tumor progression, but reduced EGFR(L858R)-mediated progression. 23143308

2012

dbSNP: rs1695
rs1695
0.010 GeneticVariation BEFREE The current data, based on a large cohort (n = 929) of Chinese patients with gastric cancer, suggested that the presence of SOD2 rs4880 and GSTP1 rs1695 genotypes may contribute to cancer progression as well as tumor aggressiveness. 22517484

2012