Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2235371
rs2235371
0.050 GeneticVariation BEFREE Association between the IRF6 rs2235371 polymorphism and the risk of nonsyndromic cleft lip with or without cleft palate in Chinese Han populations: A meta-analysis. 29017114

2017

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE MTHFR c.677C>T is a risk factor for non-syndromic cleft lip with or without cleft palate in Chile. 27387868

2016

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Maternal C677T MTHFR genotype has been identified as important factor in cleft lip with or without cleft palate (CL/P) etiology. 21781437

2013

dbSNP: rs2235371
rs2235371
0.050 GeneticVariation BEFREE Conclusion : Our results confirmed the involvement of the IRF6 variants rs642961 and rs2235371 in the etiology of nonsyndromic cleft lip with or without cleft palate</span> in a Chinese population. 23509905

2013

dbSNP: rs2235371
rs2235371
0.050 GeneticVariation BEFREE In the single locus analyses, we found rs642961 AG and AG/AA genotypes were associated with increased risk of NSOC, especially cleft lip with or without cleft palate (CL/P) and cleft lip with cleft palate (CLP), while significantly decreased risks were associated with rs2235371 CT and CT/TT genotypes. 20799332

2010

dbSNP: rs2235371
rs2235371
0.050 GeneticVariation BEFREE To investigate whether an association occurred between the IRF6 G820A polymorphism and nonsyndromic cleft lip with or without cleft palate (CL+/-P) or cleft palate only (CPO) in Chinese patients. 19115793

2009

dbSNP: rs2235371
rs2235371
0.050 GeneticVariation BEFREE Significant association between IRF6 820G->A and non-syndromic cleft lip with or without cleft palate in the Thai population. 15994871

2005

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE The 677 C --> T polymorphism in the 5-10 methylenetetrahydrofolate reductase (MTHFR) gene has been associated with nonsyndromic cleft lip with or without cleft palate (CL/P) in some populations, but not others. 15054400

2004

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Infant and parental MTHFR C677T and MTHFR A1298C genotypes and haplotypes were not associated with CL(P) risk in the case-control and transmission disequilibrium test analyses. 12672677

2003

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Our results did not indicate increased risks for CLP among infants homozygous for the C677T genotype, nor do they indicate an interaction between infant C677T genotype and maternal multivitamin use on the occurrence of CLP. 9843036

1998

dbSNP: rs642961
rs642961
0.020 GeneticVariation BEFREE Conclusion : Our results confirmed the involvement of the IRF6 variants rs642961 and rs2235371 in the etiology of nonsyndromic cleft lip with or without cleft palate in a Chinese population. 23509905

2013

dbSNP: rs1546124
rs1546124
0.020 GeneticVariation BEFREE We also found association of SNP rs1546124 with cleft palate alone (CP) in South Americans (Guatemala and ECLAMC) and combined Hispanics (Guatemala, ECLAMC, and Texas Hispanics; p  =  .03 for both comparisons) and with both cleft lip with cleft palate (CLP; p  =  .04) and CL(P) (p  =  .02) in North Americans. 20815724

2011

dbSNP: rs1546124
rs1546124
0.020 GeneticVariation BEFREE Furthermore, the CC genotype at rs1546124 was associated with increased risk for cleft lip with or without cleft palate (CL/P; OR, 2.11; 95% CI, 1.41-3.15; p(correct) = 1.5 × 10(-4) ) and for cleft palate only (CPO; OR, 2.93; 95% CI, 1.69-5.07; p(correct) = 5.4 × 10(-4) ), whereas the T allele of rs4783099 was associated with decreased risk for CPO. 21800413

2011

dbSNP: rs642961
rs642961
0.020 GeneticVariation BEFREE In the single locus analyses, we found rs642961 AG and AG/AA genotypes were associated with increased risk of NSOC, especially cleft lip with or without cleft palate (CL/P) and cleft lip with cleft palate (CLP), while significantly decreased risks were associated with rs2235371 CT and CT/TT genotypes. 20799332

2010

dbSNP: rs397507444
rs397507444
0.020 GeneticVariation BEFREE MTHFR 677TT alone and IRF6 820GG together with MTHFR 677CT, but not MTHFR A1298C, are risks for nonsyndromic cleft lip with or without cleft palate in an Indian population. 19419265

2009

dbSNP: rs397507444
rs397507444
0.020 GeneticVariation BEFREE Infant and parental MTHFR C677T and MTHFR A1298C genotypes and haplotypes were not associated with CL(P) risk in the case-control and transmission disequilibrium test analyses. 12672677

2003

dbSNP: rs1972041
rs1972041
0.010 GeneticVariation BEFREE Association of single nucleotide polymorphisms in TPM1 rs11071720, rs3803499, rs12148828, and rs1972041 with the risk of nonsyndromic cleft lip with or without cleft palate in a sample of the Iranian population, a preliminary report. 30888054

2019

dbSNP: rs12532
rs12532
0.010 GeneticVariation BEFREE In an analysis stratified according to disease type, rs12532 was associated with the risk of cleft palate only (CPO) but not with the risk of cleft lip with or without cleft palate (CL/P). 29664137

2018

dbSNP: rs1258763
rs1258763
0.010 GeneticVariation BEFREE In the cleft subgroup, we found that the GREM1 rs1258763 GA genotype might contribute to the elevated risk of the cleft lip with or without cleft palate (CL/P) (P = .029). 29149498

2018

dbSNP: rs201002930
rs201002930
0.010 GeneticVariation BEFREE In the present study, we aimed to inspect the relationship between WNT3 (rs3809857 and rs9890413), WNT3A (rs752107 and rs3121310), and WNT10a rs201002930 (c.392 C>T) polymorphisms and nonsyndromic cleft lip with or without cleft palate in an Iranian population. 29356097

2018

dbSNP: rs2910164
rs2910164
0.010 GeneticVariation BEFREE We found that compared with the C allele, the rs2910164 G allele of pre-miR-146a was associated with an increased risk of NSOC (additive model: odds ratio [OR] = 1.17, 95% confidence interval [CI]: 1.06-1.30, P = 0.002), including both cleft lip with or without cleft palate (CL/P) and cleft palate only (CPO). 29484780

2018

dbSNP: rs3121310
rs3121310
0.010 GeneticVariation BEFREE No significant association was observed between the rs752107 and rs3121310 variants and risk/protection of nonsyndromic cleft lip with or without cleft palate. 29356097

2018

dbSNP: rs3809857
rs3809857
0.010 GeneticVariation BEFREE The findings suggest that the rs3809857 polymorphism significantly decreased the risk of nonsyndromic cleft lip with or without cleft palate in codominant (odds ratio = 0.16, 95% confidence interval = 0.03-0.75, P = 0.020, TT vs GG), recessive (odds ratio = 0.16, 95% confidence interval = 0.03-0.72, P = 0.009, TT vs GG + GT) inheritance models. 29356097

2018

dbSNP: rs7552
rs7552
0.010 GeneticVariation BEFREE 2p24.2 (rs7552) is a susceptibility locus for nonsyndromic cleft lip with or without cleft palate in the Brazilian population. 29488623

2018

dbSNP: rs9890413
rs9890413
0.010 GeneticVariation BEFREE The rs9890413 variant marginally decreased the risk of nonsyndromic cleft lip with or without cleft palate in codominant (odds ratio = 0.41, 95% confidence interval = 0.17-0.99, P = 0.047, AG vs AA) model. 29356097

2018