Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1353702185
rs1353702185
0.020 GeneticVariation BEFREE Our results showed that the frequencies of genotypes for MDM2 SNP309 and TP53 Arg72Pro did not differ between MDS and healthy controls and that these polymorphisms were not associated with clinical and laboratory parameters, disease progression and overall survival, suggesting that MDM2 and TP53 polymorphisms are not involved in risk for MDS, or in the clinical and laboratory characteristics of the disease. 22668018

2012

dbSNP: rs371769427
rs371769427
A 0.850 GeneticVariation CLINVAR Clinical implications of U2AF1 mutation in patients with myelodysplastic syndrome and its stability during disease progression. 23861105

2013

dbSNP: rs267607040
rs267607040
0.700 GeneticVariation UNIPROT SETBP1 mutation analysis in 944 patients with MDS and AML. 23648668

2013

dbSNP: rs267607040
rs267607040
0.700 GeneticVariation UNIPROT Mutations in SETBP1 are recurrent in myelodysplastic syndromes and often coexist with cytogenetic markers associated with disease progression. 23889083

2013

dbSNP: rs267607042
rs267607042
0.700 GeneticVariation UNIPROT SETBP1 mutation analysis in 944 patients with MDS and AML. 23648668

2013

dbSNP: rs267607042
rs267607042
0.700 GeneticVariation UNIPROT Mutations in SETBP1 are recurrent in myelodysplastic syndromes and often coexist with cytogenetic markers associated with disease progression. 23889083

2013

dbSNP: rs77375493
rs77375493
0.100 GeneticVariation BEFREE Recently published studies report a small percentage of patients with RARS-T. Sixty percent of these have JAK2 V617F mutation, which can suggest the coexistence of two pathological conditions (MDS and MPN). 24399021

2013

dbSNP: rs121913507
rs121913507
KIT
0.020 GeneticVariation BEFREE Quantitative mutation analysis showed higher levels of mutant KIT D816V in SM-CMML and SM-MDS than in pure SM (P < 0.001). 23440662

2013

dbSNP: rs121913682
rs121913682
KIT
0.020 GeneticVariation BEFREE Quantitative mutation analysis showed higher levels of mutant KIT D816V in SM-CMML and SM-MDS than in pure SM (P < 0.001). 23440662

2013

dbSNP: rs751689316
rs751689316
0.020 GeneticVariation BEFREE Stepwise transduction of D171N followed by BMI1 in human CD34(+) cells resulted in long-term proliferation with a retained CD34(+) cell fraction, which is quite similar to the phenotype in patients with higher-risk MDSs. 23471304

2013

dbSNP: rs1045642
rs1045642
0.010 GeneticVariation BEFREE Moreover, MDR-1 C3435T may have a protective effect against MDS progression because the expected lower expression of P-glycoprotein would lead to a higher degree of cell death. 23684483

2013

dbSNP: rs2072671
rs2072671
CDA
0.010 GeneticVariation BEFREE The effect of CDA SNP A79C and gender on CDA expression, enzyme activity, and drug pharmacokinetics/pharmacodynamics was examined in mice and humans, and the impact on overall survival (OS) was evaluated in 5-azacytidine/decitabine-treated patients with MDS (n = 90) and cytarabine-treated patients with acute myeloid leukemia (AML) (n = 76). 23287564

2013

dbSNP: rs587779821
rs587779821
ATM
0.010 GeneticVariation BEFREE Quantitative mutation analysis showed higher levels of mutant KIT D816V in SM-CMML and SM-MDS than in pure SM (P < 0.001). 23440662

2013

dbSNP: rs2308321
rs2308321
0.010 GeneticVariation BEFREE Two non-synonymous SNPs present in the methylguanine methyltransferase (MGMT) gene, in complete linkage disequilibrium, were significantly associated with t-MDS: rs2308321 and rs2308327, with a raw p value of 7.4 × 10(-5) and a corrected p value after Benjamini-Hochberg correction of 0.014. 24238921

2014

dbSNP: rs2308327
rs2308327
0.010 GeneticVariation BEFREE Two non-synonymous SNPs present in the methylguanine methyltransferase (MGMT) gene, in complete linkage disequilibrium, were significantly associated with t-MDS: rs2308321 and rs2308327, with a raw p value of 7.4 × 10(-5) and a corrected p value after Benjamini-Hochberg correction of 0.014. 24238921

2014

dbSNP: rs4553808
rs4553808
0.010 GeneticVariation BEFREE We tested the hypothesis that SNP rs4553808 is associated with RFS, OS, nonrelapse mortality (NRM) and the cumulative incidence of acute graft-versus-host disease (GVHD) and chronic GVHD in adults with acute myeloid leukemia and advanced myelodysplastic syndrome undergoing a first 8/8 or 7/8 HLA-matched unrelated donor HSCT. 24631737

2014

dbSNP: rs893810317
rs893810317
0.010 GeneticVariation BEFREE Thus, we conducted whole-genome sequencing on a patient with a germline GATA-2 heterozygous mutation (c. 988 C > T; p. R330X), who had a history suggestive of immunodeficiency and evolved into MDS/AML. 24782121

2014

dbSNP: rs371769427
rs371769427
0.850 GeneticVariation BEFREE These data suggest that the S34F mutation alters U2AF1 function in the context of specific RNA sequences, leading to aberrant alternative splicing of target genes, some of which may be relevant for MDS pathogenesis. 25311244

2015

dbSNP: rs371246226
rs371246226
0.710 GeneticVariation UNIPROT We previously identified missense mutations in the U2AF1 splicing factor affecting codons S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo myelodysplastic syndrome (MDS). 25311244

2015

dbSNP: rs371246226
rs371246226
0.710 GeneticVariation BEFREE We previously identified missense mutations in the U2AF1 splicing factor affecting codons S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo myelodysplastic syndrome (MDS). 25311244

2015

dbSNP: rs77375493
rs77375493
0.100 GeneticVariation BEFREE Herein, we describe the clinical, morphologic, immunophenotypic, cytogenetic, and molecular genetic findings in two MDS/AML cases that contained both MYC rearrangement and the JAK2 V617F mutation. 26382622

2015

dbSNP: rs1800562
rs1800562
0.050 GeneticVariation BEFREE The H63D variant was observed in 35% and the C282Y variant as heterozygous in 5% of patients with MDS with IOL. 25841232

2015

dbSNP: rs1799945
rs1799945
0.040 GeneticVariation BEFREE The H63D variant was observed in 35% and the C282Y variant as heterozygous in 5% of patients with MDS with IOL. 25841232

2015

dbSNP: rs1042522
rs1042522
0.030 GeneticVariation BEFREE These data underscore the importance of TP53 R72P and MDM2 SNP309 SNPs in MDS, and provide a novel scoring system independent of IPSS that is predictive for disease outcome. 26416416

2015

dbSNP: rs1042522
rs1042522
0.030 GeneticVariation BEFREE These findings comprise the largest MDS R72P SNP analysis. 25768405

2015