Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1949829
rs1949829
T 0.800 GeneticVariation GWASCAT Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs1949829
rs1949829
T 0.800 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs26595
rs26595
T 0.800 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs26595
rs26595
T 0.800 GeneticVariation GWASCAT Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs595018
rs595018
A 0.800 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs595018
rs595018
A 0.800 GeneticVariation GWASCAT Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs7503953
rs7503953
A 0.800 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs7503953
rs7503953
A 0.800 GeneticVariation GWASCAT Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs9277554
rs9277554
C 0.800 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs9277554
rs9277554
C 0.800 GeneticVariation GWASCAT Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs9277341
rs9277341
T 0.700 GeneticVariation GWASDB Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. 23740775

2013

dbSNP: rs2476601
rs2476601
0.030 GeneticVariation BEFREE PTPN22 R620W SNP was genotyped in a cohort of 344 AAV patients [143 with granulomatosis with polyangiitis (Wegener's) (GPA), 102 with microscopic polyangiitis (MPA) and 99 with Churg-Strauss syndrome (CSS)] and in 945 healthy controls. 22237046

2012

dbSNP: rs2476601
rs2476601
0.030 GeneticVariation BEFREE This meta-analysis does not show that the PTPN22 C1858T polymorphism is associated with vasculitis susceptibility, but does show that this polymorphism is associated with susceptibility to AAV, WG, and ANCA status in WG. 22696186

2012

dbSNP: rs2476601
rs2476601
0.030 GeneticVariation BEFREE Recently a single-nucleotide polymorphism (SNP) 1858 C/T within this gene was shown to be a risk factor for several autoimmune diseases, such as rheumatoid arthritis (RA), Graves' Disease (GD), systemic lupus erythematosus (SLE), Wegener's granulomatosis (WG) and type 1 diabetes mellitus (T1D). 21467606

2011

dbSNP: rs5844572
rs5844572
0.010 GeneticVariation BEFREE The human study involved 1,077 patients with GPA and healthy controls whose serum was genotyped by capillary electrophoresis for the MIF -794 CATT<sub>5-8</sub> promoter microsatellite (rs5844572). 29953750

2018

dbSNP: rs3117242
rs3117242
0.010 GeneticVariation BEFREE The rs3117242 of HLA-DPB1 could be considered a genetic risk factor for GPA in Chinese Han people. 26014903

2017

dbSNP: rs763361
rs763361
0.010 GeneticVariation BEFREE Recently, there has been increasing evidence shown that a non-synonymous exchange (Gly307Ser/rs763361) of the CD226 gene on chromosome 18q22 is linked to several autoimmune diseases (ADs) including type 1 diabetes (T1D), celiac disease (CED), rheumatoid arthritis (RA), multiple sclerosis (MS), Grave's disease, Wegener's granulomatosis (WG), psoriasis, and primary sicca syndrome (pSS). 23073294

2013

dbSNP: rs42041
rs42041
0.010 GeneticVariation BEFREE While most polymorphisms did not show suspicious effects on WG susceptibility, SNPs representing TNFAIP3 (rs6922466, p = 0.032, odds ratio (OR) 0.83, 95% confidence interval (CI) 0.7--0.98) and CDK6 (rs42041, p = 0.0201, OR 1.21, 95% CI 1.03-1.43) revealed nominally significant differences in allele distribution. 20049410

2010

dbSNP: rs6922466
rs6922466
0.010 GeneticVariation BEFREE While most polymorphisms did not show suspicious effects on WG susceptibility, SNPs representing TNFAIP3 (rs6922466, p = 0.032, odds ratio (OR) 0.83, 95% confidence interval (CI) 0.7--0.98) and CDK6 (rs42041, p = 0.0201, OR 1.21, 95% CI 1.03-1.43) revealed nominally significant differences in allele distribution. 20049410

2010

dbSNP: rs151269264
rs151269264
0.010 GeneticVariation BEFREE Our study showed no association between the p53 SNP G72C and the MDM2 SNP T309G with susceptibility or course of disease in patients with WG. 18799058

2009

dbSNP: rs730881997
rs730881997
0.010 GeneticVariation BEFREE Our study showed no association between the p53 SNP G72C and the MDM2 SNP T309G with susceptibility or course of disease in patients with WG. 18799058

2009

dbSNP: rs10548957
rs10548957
0.010 GeneticVariation BEFREE Analysis of the RXRB gene located in the WG associated region revealed associations of two variations (rs10548957 pallelic = 0.02 and rs6531 pallelic = 5.20 x 10-5, OR = 1.88). 16526951

2006

dbSNP: rs2076530
rs2076530
0.010 GeneticVariation BEFREE Significant differences were not demonstrable for the sarcoidosis associated splice-site variation (rs2076530 pallelic = 0.80) in our WG cohort. 16526951

2006

dbSNP: rs6531
rs6531
0.010 GeneticVariation BEFREE Analysis of the RXRB gene located in the WG associated region revealed associations of two variations (rs10548957 pallelic = 0.02 and rs6531 pallelic = 5.20 x 10-5, OR = 1.88). 16526951

2006

dbSNP: rs118099717
rs118099717
0.010 GeneticVariation BEFREE To analyze the association of Wegener's granulomatosis (WG) with 2 single nucleotide polymorphisms (SNP), a +49 A/G polymorphism in coding sequence (CDS) 1 and a C/T base exchange in the promoter region at position -318. 12022356

2002