Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs28934908
rs28934908
0.050 GeneticVariation BEFREE The p.Ala140Val mutation is recurrent, as it was already described in 4 families with X-linked mental retardation and in three sporadic male patients with intellectual disability. 27465203

2016

dbSNP: rs28934908
rs28934908
0.050 GeneticVariation BEFREE In this study, DNA samples from 363 male individuals with syndromic and non-syndromic mental retardation</span> and other psychiatric diseases were screened for A140V (419C>T) mutation in the MECP2 gene, considered the most frequent MECP2 mutation in males. 15814190

2005

dbSNP: rs28934908
rs28934908
0.050 GeneticVariation BEFREE This strongly suggests that A140V is a hot spot of mutation resulting in moderate to severe MR in males. 11885030

2002

dbSNP: rs28934908
rs28934908
0.050 GeneticVariation BEFREE Identification of a family with nonspecific mental retardation (MRX79) with the A140V mutation in the MECP2 gene: is there a need for routine screening? 12325019

2002

dbSNP: rs28934908
rs28934908
0.050 GeneticVariation BEFREE The authors recently described a novel A140V MECP2 missense mutation in an Italian family with X-linked semidominant mental retardation. 11805248

2002

dbSNP: rs121918368
rs121918368
0.030 GeneticVariation BEFREE We also show that the level of the mutant protein can be restored by a treatment of cells with a clinically utilized proteasome inhibitor, suggesting that this agent may be useful for the treatment of mental retardation associated with the CRBN R419X mutation. 23983124

2013

dbSNP: rs121918368
rs121918368
0.030 GeneticVariation BEFREE The nonsense mutation, R419X, causes deletion of 24 amino acids at the C-terminus of CRBN, leading to mild ID. 26188093

2015

dbSNP: rs121918368
rs121918368
0.030 GeneticVariation BEFREE Dysregulation of large-conductance Ca2+-activated K+ channel expression in nonsyndromal mental retardation due to a cereblon p.R419X mutation. 18414909

2008

dbSNP: rs121434613
rs121434613
0.020 GeneticVariation BEFREE These mutations include two "severe" G424R and K389N variants (responsible for severe ID and CCA) and the "mild" A365E variant (responsible for nonsyndromic mild ID). 31843706

2020

dbSNP: rs121434613
rs121434613
0.020 GeneticVariation BEFREE X-linked mild non-syndromic mental retardation with neuropsychiatric problems and the missense mutation A365E in PAK3. 12884430

2003

dbSNP: rs397507444
rs397507444
0.020 GeneticVariation BEFREE Screening for methylenetetrahydrofolate reductase C677T and A1298C polymorphisms in Indian patients with idiopathic mental retardation. 18510799

2008

dbSNP: rs397507444
rs397507444
0.020 GeneticVariation BEFREE Lack of association between MTHFR C677T and MTHFR A1298C genetic polymorphisms and mental retardation. 18782485

2008

dbSNP: rs61748420
rs61748420
0.020 GeneticVariation BEFREE The first mutation, an E137G, was identified in the MRX16 family, and the second, R167W, was identified in a new mental retardation (MR) family shown to be linked to Xq28. 11309367

2001

dbSNP: rs61748420
rs61748420
0.020 GeneticVariation BEFREE Targeted next-generation sequencing of a panel of intellectual disability related genes was performed on two unrelated male patients, and two missense variants in MECP2 were identified (p.Gly185Val and p.Arg167Trp). 26490184

2016

dbSNP: rs745756308
rs745756308
0.020 GeneticVariation BEFREE Leucine 208 in human histamine N-methyltransferase emerges as a hotspot for protein stability rationalizing the role of the L208P variant in intellectual disability. 27769936

2017

dbSNP: rs745756308
rs745756308
0.020 GeneticVariation BEFREE We performed autozygosity mapping followed by targeted exome sequencing and identified two homozygous HNMT alterations, p.Gly60Asp and p.Leu208Pro, in patients affected with nonsyndromic autosomal recessive intellectual disability from two unrelated consanguineous families of Turkish and Kurdish ancestry, respectively. 26206890

2015

dbSNP: rs863225264
rs863225264
0.020 GeneticVariation BEFREE Finally, a constitutional de novo mutation of MTOR (p.Glu1799Lys) was identified in 3 unrelated children with diffuse megalencephaly and intellectual disability. 27159400

2016

dbSNP: rs863225264
rs863225264
0.020 GeneticVariation BEFREE Our report brings the total number of families who harbor MTOR p.E1799K in association with megalencephaly and ID to three. 26542245

2015

dbSNP: rs10194776
rs10194776
0.010 GeneticVariation BEFREE Two polymorphisms in the HTR2B gene, rs10194776 and rs16827801, were associated with IQ (P=0.0004 and 0.003, respectively), ID (P=0.02 and 0.03) and LD (P=0.04 and 0.004). 24887447

2014

dbSNP: rs10410239
rs10410239
0.010 GeneticVariation BEFREE Linkage disequilibrium (LD) analysis revealed that the rs6511901 and rs10410239 polymorphisms of CC2D1A were in strong LD (D'=0.865), and haplotype analysis showed evidence for over-transmission from parents to MR offspring (p=0.0009). 22023432

2012

dbSNP: rs1047322213
rs1047322213
0.010 GeneticVariation BEFREE Whole exome sequencing identified a novel missense PQBP1 variant c.530G>A:p.R177H in the second family, in which the index patient presented with intellectual disability and dysmorphic facial features reminiscent of Kabuki-like syndrome and his brain magnetic resonance imaging revealed partial agenesis of corpus callosum, mild vermis, and brainstem hypoplasia. 30244542

2018

dbSNP: rs104886492
rs104886492
0.010 GeneticVariation BEFREE The c.194T>C mutation in HSD17B10 can be identified by the restriction fragment polymorphism analysis, thereby facilitating the screening of this novel mutation in individuals with intellectual disability of unknown etiology and their family members much easier. 22132097

2011

dbSNP: rs104894743
rs104894743
ARX
0.010 GeneticVariation BEFREE We generated three types of mice with knocked-in ARX mutations associated with X-linked lissencephaly (P353R) and mental retardation [P353L and 333ins(GCG)7]. 19605412

2009

dbSNP: rs1052108705
rs1052108705
0.010 GeneticVariation BEFREE We established an induced pluripotent stem cell (iPSC) line (SDQLCHi010-A) from peripheral blood mononuclear cells isolated from a 4-year-old boy with optic nerve malformation and intellectual disability carrying a heterozygous mutation (c.220A>G (p.S74G)) in PAX6 gene. 31707209

2019

dbSNP: rs1057516085
rs1057516085
0.010 GeneticVariation BEFREE The aim of the present work has been to investigate the molecular mechanisms of channel dysfunction caused by voltage-sensing domain mutations in Kv7.2 (R144Q, R201C, and R201H) or Kv7.3 (R230C) recently found in patients with epileptic encephalopathies and/or intellectual disability. 25740509

2015