DisGeNET - a database of gene-disease associations

List of associated variants

Arthritis, C0003864

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs2910164	MIR3142HG ; MIR146A	0.447	0.880	5	160485411	mature miRNA variant	C/G	snv	0.71; 4.1E-06	0.70	193
rs540558	OSMR ; OSMR-AS1	0.925	0.120	5	38844171	intron variant	C/G	snv		0.19	2
rs1799945	LOC108783645 ; HFE	0.452	0.760	6	26090951	missense variant	C/G;T	snv	0.11	0.10	226
rs3743930	MEFV	0.611	0.720	16	3254626	missense variant	C/G;T	snv	7.1E-02		43
rs1800925	IL13 ; TH2LCRR	0.627	0.560	5	132657117	non coding transcript exon variant	C/G;T	snv			37
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs11614913	HOXC6 ; MIR196A2	0.512	0.760	12	53991815	mature miRNA variant	C/T	snv	0.39	0.34	111
rs2070600	AGER	0.561	0.760	6	32183666	missense variant	C/T	snv	5.3E-02	3.6E-02	82
rs1416580204	MOK	0.608	0.720	14	102250837	missense variant	C/T	snv	4.0E-06	7.0E-06	49
rs6897932	IL7R	0.683	0.560	5	35874473	missense variant	C/T	snv	0.23	0.21	25
rs224222	MEFV	0.724	0.440	16	3254463	missense variant	C/T	snv	0.24	0.21	15
rs10499194		0.752	0.400	6	137681500	intron variant	C/T	snv		0.24	10
rs1234315	TNFSF4	0.807	0.400	1	173209324	upstream gene variant	C/T	snv		0.57	6
rs3890733	VDR	0.882	0.120	12	47895590	intron variant	C/T	snv		0.27	3
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	262
rs5743708	TLR2	0.525	0.800	4	153705165	missense variant	G/A	snv	1.7E-02	1.8E-02	98
rs13277113	BLK	0.695	0.520	8	11491677	intron variant	G/A	snv		0.25	18
rs1143679	ITGAM	0.732	0.520	16	31265490	missense variant	G/A	snv	9.7E-02	0.11	14
rs771184127	NOD2	0.790	0.200	16	50710807	missense variant	G/A	snv	1.2E-05	2.1E-05	9
rs4958847	IRGM	0.807	0.120	5	150860025	intron variant	G/A	snv		0.25	8
rs1057519090	COL4A2	0.851	0.160	13	110492105	missense variant	G/A	snv			7
rs11168268	VDR	0.925	0.120	12	47858029	intron variant	G/A	snv		0.57	2
rs1562444	MTNR1B	0.925	0.120	11	92982683	3 prime UTR variant	G/A	snv		0.55	2
rs204989	GPSM3	0.925	0.120	6	32194075	intron variant	G/A	snv		0.21	2
rs755622	MIF-AS1 ; MIF	0.611	0.720	22	23894205	intron variant	G/C	snv		0.26	44