DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Multiple Sclerosis

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs11676922	AFF3	0.925	0.160	2	100190478	intron variant	T/A	snv		0.51	4
rs10516487	BANK1	0.752	0.360	4	101829919	missense variant	G/A;T	snv	0.26; 8.0E-06		11
rs1799969	ICAM1	0.637	0.560	19	10284116	missense variant	G/A	snv	0.11	9.3E-02	38
rs5498	ICAM4 ; ICAM1	0.531	0.760	19	10285007	missense variant	A/G	snv	0.44	0.37	99
rs26232	MACIR	0.925	0.160	5	103261019	intron variant	C/T	snv		0.30	4
rs34536443	TYK2	0.667	0.400	19	10352442	missense variant	G/C	snv	2.7E-02	2.8E-02	25
rs548234	ATG5	0.763	0.360	6	106120159	intron variant	C/T	snv		0.76	11
rs6568431	ATG5	0.790	0.320	6	106140931	intron variant	A/C	snv		0.61	7
rs3087456	CIITA ; LOC105371080	0.742	0.480	16	10877045	intron variant	G/A	snv		0.53	14
rs4774	CIITA	0.807	0.240	16	10906991	missense variant	G/C	snv	0.30	0.28	7
rs12708716	CLEC16A	0.807	0.320	16	11086016	intron variant	A/G	snv		0.37	7
rs2903692	CLEC16A	0.807	0.360	16	11144926	intron variant	G/A	snv		0.33	6
rs6498169	CLEC16A	0.807	0.280	16	11155472	non coding transcript exon variant	G/A	snv		0.66	6
rs11074956		0.925	0.160	16	11243864	downstream gene variant	G/T	snv		0.34	2
rs17561	IL1A	0.672	0.560	2	112779646	missense variant	C/A	snv	0.27	0.26	23
rs6679677	PHTF1	0.653	0.320	1	113761186	upstream gene variant	C/A	snv		6.7E-02	26
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs2736340		0.683	0.480	8	11486464	upstream gene variant	C/T	snv		0.25	22
rs13277113	BLK	0.695	0.520	8	11491677	intron variant	G/A	snv		0.25	18
rs11586238		0.925	0.160	1	116720516	regulatory region variant	C/G	snv		0.19	4
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1801131	MTHFR	0.535	0.840	1	11794419	missense variant	T/G	snv	0.29	0.26	93
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614