DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Diabetes Mellitus, Insulin-Dependent

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1003878	TSBP1-AS1 ; TSBP1	0.882	0.200	6	32332045	stop gained	G/A	snv	0.19	0.23	3
rs10181656	STAT4	0.763	0.360	2	191105153	intron variant	G/C	snv		0.79	9
rs10484566	PSMB9	0.925	0.200	6	32867481	regulatory region variant	T/G	snv		6.8E-02	2
rs1050152	SLC22A4 ; MIR3936HG	0.776	0.480	5	132340627	missense variant	C/T	snv	0.29	0.28	10
rs1055569	HCG26 ; HCP5	0.882	0.240	6	31472305	non coding transcript exon variant	C/T	snv		0.41	3
rs1077393	BAG6	0.882	0.200	6	31642752	non coding transcript exon variant	A/G	snv		0.44	3
rs10795791		0.925	0.200	10	6066377	upstream gene variant	A/G	snv		0.40	2
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs11203203	UBASH3A	0.807	0.240	21	42416077	intron variant	G/A	snv		0.28	9
rs11209026	IL23R	0.597	0.680	1	67240275	missense variant	G/A	snv	4.2E-02	4.6E-02	46
rs11229	PRRC2A	0.851	0.280	6	31635993	synonymous variant	A/G	snv	0.14	0.17	6
rs1143679	ITGAM	0.732	0.520	16	31265490	missense variant	G/A	snv	9.7E-02	0.11	14
rs1150752	TNXB	0.882	0.240	6	32096949	missense variant	T/C;G	snv	5.9E-02		3
rs11614913	HOXC6 ; MIR196A2	0.512	0.760	12	53991815	mature miRNA variant	C/T	snv	0.39	0.34	111
rs11889341	STAT4	0.732	0.480	2	191079016	intron variant	C/T	snv		0.21	12
rs1214611	CD247	0.925	0.200	1	167479867	intron variant	A/G	snv		0.54	2
rs12153855	TNXB	0.776	0.320	6	32107027	intron variant	T/C	snv		0.11	11
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs12177980	LOC102725019	0.925	0.200	6	32718307	non coding transcript exon variant	G/A	snv		0.37	2
rs12198173	TNXB	0.827	0.240	6	32059031	intron variant	G/A	snv		0.10	9
rs12566340	AP4B1-AS1 ; BCL2L15	0.925	0.200	1	113877706	3 prime UTR variant	C/A;T	snv			3
rs12660382	HCP5	0.882	0.200	6	31475546	intron variant	C/T	snv		0.19	3
rs12708716	CLEC16A	0.807	0.320	16	11086016	intron variant	A/G	snv		0.37	7
rs1270942	CFB ; CYP21A2	0.742	0.440	6	31951083	non coding transcript exon variant	A/G	snv		7.5E-02	11
rs12917716	CLEC16A	0.851	0.200	16	11095291	intron variant	G/C	snv		0.51	4