DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1799782	XRCC1	0.474	0.800	19	43553422	missense variant	G/A	snv	9.5E-02	7.0E-02	151
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs25489	XRCC1	0.550	0.720	19	43552260	missense variant	C/G;T	snv	8.5E-06; 7.1E-02		78
rs774359492	WDHD1	0.807	0.200	14	55008684	missense variant	C/T	snv	4.0E-06	7.0E-06	7
rs7097397	WDFY4	0.925	0.120	10	48817351	missense variant	G/A	snv	0.38	0.31	2
rs707928	VWA7	0.827	0.320	6	31774813	intron variant	A/G	snv		0.47	5
rs1222213359	VEGFA	0.574	0.720	6	43770966	missense variant	G/A	snv			62
rs2010963	VEGFA	0.542	0.840	6	43770613	5 prime UTR variant	C/G	snv		0.68	82
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs3890733	VDR	0.882	0.120	12	47895590	intron variant	C/T	snv		0.27	3
rs4760648	VDR	0.851	0.200	12	47886882	intron variant	C/A;G;T	snv			4
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs2283790	UBE2L3	0.882	0.120	22	21602364	intron variant	A/G	snv		0.21	3
rs11203203	UBASH3A	0.807	0.240	21	42416077	intron variant	G/A	snv		0.28	9
rs1893592	UBASH3A	0.742	0.280	21	42434957	missense variant	A/C;G	snv	0.27; 8.0E-06		12
rs2277798	UBASH3A	0.925	0.120	21	42403997	missense variant	A/G	snv	0.55	0.60	3
rs1448674651	TYMS ; ENOSF1	0.667	0.560	18	671384	missense variant	G/A;C	snv	4.0E-06		23
rs11085725	TYK2	0.851	0.160	19	10351837	intron variant	C/T	snv		0.24	4
rs34536443	TYK2	0.667	0.400	19	10352442	missense variant	G/C	snv	2.7E-02	2.8E-02	25
rs35018800	TYK2	0.790	0.160	19	10354167	missense variant	G/A	snv	4.6E-03	4.9E-03	9
rs6457536	TSBP1 ; TSBP1-AS1	0.882	0.200	6	32305988	intron variant	A/G	snv		0.21	3
rs6935269	TSBP1 ; TSBP1-AS1	0.925	0.120	6	32292573	intron variant	T/C	snv		0.25	2
rs1003878	TSBP1-AS1 ; TSBP1	0.882	0.200	6	32332045	stop gained	G/A	snv	0.19	0.23	3
rs3129939	TSBP1-AS1 ; TSBP1	0.827	0.360	6	32368989	intron variant	A/G	snv		0.14	5
rs3129943	TSBP1-AS1 ; TSBP1	0.851	0.240	6	32370918	intron variant	A/G	snv		0.26	4