DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Malignant neoplasm of lung

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs1052133	OGG1 ; CAMK1	0.476	0.800	3	9757089	missense variant	C/G	snv	0.27	0.22	147
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	72
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs11137037	ANGPT2 ; MCPH1	0.851	0.200	8	6538661	intron variant	A/C	snv		0.40	4
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs1136410	PARP1	0.559	0.760	1	226367601	missense variant	A/G	snv	0.21	0.15	70
rs1150735	RNF39	0.925	0.200	6	30077422	upstream gene variant	G/A	snv		0.30	3
rs11543848	EGFR	0.790	0.240	7	55161562	missense variant	G/A;C;T	snv			7
rs11614913	HOXC6 ; MIR196A2	0.512	0.760	12	53991815	mature miRNA variant	C/T	snv	0.39	0.34	111
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs1222213359	VEGFA	0.574	0.720	6	43770966	missense variant	G/A	snv			62
rs12674822	MCPH1 ; ANGPT2	0.851	0.200	8	6531695	intron variant	T/G	snv		0.49	4
rs1270942	CFB ; CYP21A2	0.742	0.440	6	31951083	non coding transcript exon variant	A/G	snv		7.5E-02	11
rs12826786		0.683	0.480	12	53961717	upstream gene variant	C/T	snv		0.38	26
rs12901682	PSMA4	0.851	0.200	15	78540881	5 prime UTR variant	A/C;T	snv			4
rs1353702185	MDM2	0.550	0.720	12	68839311	missense variant	C/G	snv	4.0E-06		79
rs1360485	HMGB1	0.742	0.320	13	30457747	3 prime UTR variant	C/T	snv		0.58	16
rs140693	MBD4	0.763	0.280	3	129436608	missense variant	C/T	snv	5.8E-02	3.1E-02	10
rs1412125	HMGB1	0.724	0.360	13	30467458	intron variant	C/G;T	snv			17
rs1535045	CD40	0.742	0.360	20	46119460	intron variant	C/A;G;T	snv			12
rs17561	IL1A	0.672	0.560	2	112779646	missense variant	C/A	snv	0.27	0.26	23
rs1794282		0.807	0.320	6	32698749	intergenic variant	C/T	snv		6.4E-02	6
rs1799724	LTA ; TNF	0.600	0.680	6	31574705	upstream gene variant	C/T	snv		8.5E-02	47