DisGeNET - a database of gene-disease associations

List of associated variants

Rheumatoid Arthritis, C0003873

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs35761398	CNR2	0.701	0.520	1	23875429	missense variant	TT/CC	mnv			19
rs7517847	IL23R ; C1orf141	0.689	0.600	1	67215986	intron variant	T/G	snv		0.37	19
rs8192284	IL6R	0.724	0.720	1	154454494	missense variant	A/C;T	snv			19
rs6136	SELP	0.752	0.440	1	169594713	missense variant	T/G	snv	8.2E-02	7.5E-02	17
rs2501432	CNR2	0.716	0.480	1	23875430	missense variant	T/C;G	snv	0.62		16
rs1050501	FCGR2B	0.732	0.440	1	161674008	missense variant	T/C	snv	0.16	0.19	15
rs2201841	C1orf141 ; IL23R	0.716	0.440	1	67228519	intron variant	A/G;T	snv			14
rs396991	FCGR3A	0.742	0.480	1	161544752	missense variant	A/C;G;T	snv	0.33; 4.1E-06		14
rs879761216	CNR2	0.732	0.480	1	23875429	frameshift variant	TT/C;T	delins			14
rs33996649	PTPN22 ; AP4B1-AS1	0.732	0.400	1	113852067	missense variant	C/T	snv	1.7E-02	1.6E-02	13
rs7528684	FCRL3	0.752	0.560	1	157701026	upstream gene variant	A/G	snv		0.57	13
rs17465637	MIA3	0.790	0.200	1	222650187	intron variant	A/C;G;T	snv	0.64; 6.4E-06		11
rs200215055	FCGR3B	0.742	0.400	1	161626196	missense variant	C/A;G;T	snv	1.5E-03; 1.2E-05; 4.0E-06		11
rs2488457	AP4B1-AS1 ; PTPN22	0.763	0.480	1	113872746	intron variant	G/A;C	snv			11
rs1343151	IL23R	0.752	0.400	1	67253446	intron variant	G/A	snv		0.41	10
rs1004819	C1orf141 ; IL23R	0.776	0.360	1	67204530	intron variant	G/A	snv		0.30	9
rs3789604	RSBN1 ; AP4B1-AS1	0.776	0.360	1	113812320	synonymous variant	T/A;C;G	snv	8.5E-06; 1.3E-05; 0.17		9
rs7539542	ADIPOR1	0.807	0.200	1	202940846	3 prime UTR variant	G/C	snv		0.58	9
rs1308699981	FCGR3A	0.807	0.440	1	161543085	missense variant	G/A	snv	4.0E-06		7
rs2274976	MTHFR	0.807	0.320	1	11790870	missense variant	C/T	snv	5.6E-02	4.2E-02	7
rs3761959	FCRL3	0.827	0.320	1	157699488	intron variant	C/A;G;T	snv			7
rs5030772	FASLG	0.790	0.320	1	172664210	intron variant	A/G	snv		9.9E-02	7
rs587745372	GJA5 ; LOC102723321	0.851	0.240	1	147773383	upstream gene variant	T/A	snv		2.8E-05	7
rs11264799	FCRL3	0.851	0.240	1	157700967	upstream gene variant	C/T	snv		0.28	6
rs1234315	TNFSF4	0.807	0.400	1	173209324	upstream gene variant	C/T	snv		0.57	6