Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs204990
GPSM3
0.851 0.280 6 32193653 intron variant C/A;T snv 4
rs2069705
IFNG-AS1 ; IFNG
0.695 0.440 12 68161231 intron variant G/A;C snv 19
rs2227981
LOC105373977 ; PDCD1
0.763 0.400 2 241851121 synonymous variant A/C;G snv 1.6E-04; 0.63 12
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs2230926
TNFAIP3
0.662 0.440 6 137874929 missense variant T/C;G snv 4.0E-06; 5.4E-02 27
rs2234767
FAS ; ACTA2
0.649 0.280 10 88989499 intron variant G/A;T snv 0.15 30
rs2239804
HLA-DRA
0.851 0.240 6 32443746 intron variant T/A;C snv 0.51 5
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs2431098 0.827 0.240 5 160460329 intron variant A/G;T snv 5
rs2523589 0.851 0.200 6 31359557 upstream gene variant G/A;T snv 4
rs25489
XRCC1
0.550 0.720 19 43552260 missense variant C/G;T snv 8.5E-06; 7.1E-02 78
rs2839698
MRPL23 ; MIR675 ; H19
0.662 0.520 11 1997623 non coding transcript exon variant G/A snv 0.41 25
rs2844511 0.807 0.200 6 31422007 intron variant A/G;T snv 10
rs2900180
C5-OT1
0.827 0.280 9 120944104 regulatory region variant T/A;C snv 5
rs3027898
IRAK1
0.752 0.360 X 154010439 downstream gene variant C/A snv 11
rs3129890 0.827 0.280 6 32446496 downstream gene variant T/A;C snv 5
rs3130618
CSNK2B ; GPANK1
0.827 0.360 6 31664357 missense variant C/A;T snv 0.15; 4.0E-06 7
rs34933034
CSK
0.925 0.120 15 74787133 intron variant G/A;T snv 3
rs35677470
DNASE1L3
0.807 0.160 3 58197909 missense variant G/A;C snv 4.8E-02; 4.0E-06 6
rs35929052 0.827 0.160 16 85960878 downstream gene variant C/G;T snv 5
rs3743930
MEFV
0.611 0.720 16 3254626 missense variant C/G;T snv 7.1E-02 43
rs3853839
TLR7
0.752 0.480 X 12889539 3 prime UTR variant C/G;T snv 10
rs396991
FCGR3A
0.742 0.480 1 161544752 missense variant A/C;G;T snv 0.33; 4.1E-06 14
rs4112788 0.851 0.120 1 152578800 downstream gene variant A/G;T snv 4
rs4760648
VDR
0.851 0.200 12 47886882 intron variant C/A;G;T snv 4