Disease: Celiac Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1799945
LOC108783645 ; HFE
0.452 0.760 6 26090951 missense variant C/G;T snv 0.11 0.10 226
rs3743930
MEFV
0.611 0.720 16 3254626 missense variant C/G;T snv 7.1E-02 43
rs9979383
RUNX1
0.925 0.200 21 35343463 intron variant C/G;T snv 5
rs2187668
LOC107986589 ; HLA-DQA2 ; HLA-DQA1
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03 20
rs394581
LOC105378083 ; LOC112267968
0.882 0.240 6 159061489 non coding transcript exon variant C/T snv 0.68 3
rs4073285
MMEL1
0.925 0.200 1 2608357 intron variant C/T snv 0.40 2
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs706778
IL2RA
0.695 0.320 10 6056986 intron variant C/T snv 0.46 19
rs74830391
ELMO1
0.925 0.200 7 37387686 intron variant C/T snv 9.7E-02 2
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 46
rs13397
MIR3202-2 ; TMEM187
0.925 0.200 X 153982797 synonymous variant G/A snv 0.27 0.15 2
rs1799969
ICAM1
0.637 0.560 19 10284116 missense variant G/A snv 0.11 9.3E-02 38
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs1800629
TNF
0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 169
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs2305764
MYO9B
0.776 0.360 19 17203024 non coding transcript exon variant G/A snv 0.52 0.50 10
rs72928038
BACH2
0.695 0.360 6 90267049 intron variant G/A snv 0.11 19
rs7731626
ANKRD55
0.716 0.240 5 56148856 intron variant G/A snv 0.30 16
rs80209296
PTPN2
0.925 0.200 18 12860802 intron variant G/A snv 2
rs947474
LINC02649 ; LINC02656
0.827 0.440 10 6348488 intron variant G/A snv 0.79 5
rs11066188
HECTD4
0.851 0.320 12 112172910 intron variant G/A;C snv 0.30; 4.1E-06 7
rs17849502
NCF2 ; SMG7
0.827 0.240 1 183563445 missense variant G/A;C;T snv 4.0E-06; 4.0E-06; 3.4E-02 5
rs1800796
IL6-AS1 ; STEAP1B ; IL6
0.555 0.760 7 22726627 non coding transcript exon variant G/C snv 9.9E-02 74
rs10754558
NLRP3
0.695 0.480 1 247448734 3 prime UTR variant G/C;T snv 20
rs6822844 0.689 0.520 4 122588266 regulatory region variant G/T snv 0.10 20