Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs509749
LY9
0.925 0.120 1 160823770 missense variant A/G snv 0.54 0.55 2
rs57095329
MIR3142HG
0.677 0.480 5 160467840 intron variant A/G snv 7.8E-02 25
rs6457536
TSBP1 ; TSBP1-AS1
0.882 0.200 6 32305988 intron variant A/G snv 0.21 3
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74 12
rs652888
EHMT2-AS1 ; EHMT2 ; LOC107986588 ; CYP21A2
0.776 0.480 6 31883457 non coding transcript exon variant A/G snv 0.18 0.20 10
rs660895
HLA-DRB1
0.752 0.360 6 32609603 intergenic variant A/G snv 0.19 10
rs6932542 0.827 0.200 6 32412485 downstream gene variant A/G snv 0.55 5
rs707928
VWA7
0.827 0.320 6 31774813 intron variant A/G snv 0.47 5
rs721917
SFTPD
0.752 0.360 10 79946568 missense variant A/G snv 0.47 0.42 14
rs7528684
FCRL3
0.752 0.560 1 157701026 upstream gene variant A/G snv 0.57 13
rs799454
SRP54-AS1
0.882 0.200 14 34927973 intron variant A/G snv 0.45 3
rs9267531
LY6G5B ; CSNK2B
0.882 0.120 6 31668965 non coding transcript exon variant A/G snv 7.5E-02 3
rs9277535
HLA-DPB1
0.724 0.440 6 33087084 3 prime UTR variant A/G snv 0.25 13
rs9357152 0.827 0.240 6 32697183 regulatory region variant A/G snv 0.24 5
rs1045642
ABCB1
0.456 0.840 7 87509329 synonymous variant A/G;T snv 0.50 214
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs2431098 0.827 0.240 5 160460329 intron variant A/G;T snv 5
rs2844511 0.807 0.200 6 31422007 intron variant A/G;T snv 10
rs4112788 0.851 0.120 1 152578800 downstream gene variant A/G;T snv 4
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs5754467
CCDC116 ; YDJC
0.851 0.160 22 21630805 upstream gene variant A/G;T snv 4
rs909253
LTA ; LOC100287329
0.641 0.600 6 31572536 intron variant A/G;T snv 34
rs9275572 0.724 0.360 6 32711222 upstream gene variant A/G;T snv 15
rs1800890
IL19
0.658 0.400 1 206776020 intron variant A/T snv 0.32 29
rs3117103
TSBP1-AS1
0.925 0.120 6 32381780 intron variant A/T snv 9.6E-02 2