Disease: Celiac Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs5498
ICAM4 ; ICAM1
0.531 0.760 19 10285007 missense variant A/G snv 0.44 0.37 99
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 46
rs653178
ATXN2
0.672 0.600 12 111569952 intron variant C/T snv 0.67 41
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 26
rs763361
CD226
0.689 0.520 18 69864406 missense variant T/A;C snv 4.0E-06; 0.52 21
rs6822844 0.689 0.520 4 122588266 regulatory region variant G/T snv 0.10 20
rs917997 0.701 0.480 2 102454108 downstream gene variant T/A;C snv 20
rs601338
FUT2 ; LOC105447645
0.742 0.280 19 48703417 stop gained G/A snv 0.38 0.45 19
rs706778
IL2RA
0.695 0.320 10 6056986 intron variant C/T snv 0.46 19
rs72928038
BACH2
0.695 0.360 6 90267049 intron variant G/A snv 0.11 19
rs12232497 0.701 0.360 17 39883866 intergenic variant T/C snv 0.35 18
rs4625
DAG1
0.716 0.280 3 49534707 3 prime UTR variant A/G snv 0.30 17
rs4676410
GPR35
0.716 0.240 2 240624322 intron variant G/A snv 0.26 17
rs1689510
SUOX
0.724 0.240 12 56002984 non coding transcript exon variant G/C snv 0.25 16
rs4246905
TNFSF15
0.716 0.400 9 114790969 missense variant T/A;C snv 0.76 16
rs602662
LOC105447645 ; FUT2
0.716 0.280 19 48703728 missense variant G/A snv 0.40 0.47 16
rs7725052 0.716 0.240 5 40487168 intron variant C/T snv 0.52 16
rs7731626
ANKRD55
0.716 0.240 5 56148856 intron variant G/A snv 0.30 16
rs12598357 0.724 0.240 16 28329624 intergenic variant A/G snv 0.43 15
rs12928404
ATXN2L
0.724 0.240 16 28835925 splice region variant T/C snv 0.44 0.45 15