Disease: Tuberculosis, Pulmonary
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 119
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 108
rs3746444
MIR499A ; MIR499B ; MYH7B ; LOC107985393
0.514 0.760 20 34990448 mature miRNA variant A/G snv 0.20 0.19 105
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 98
rs1544410
VDR
0.542 0.760 12 47846052 intron variant C/A;G;T snv 78
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 46
rs352140
TLR9
0.630 0.680 3 52222681 synonymous variant C/A;G;T snv 2.0E-05; 0.49 42
rs3804099
TLR2
0.627 0.680 4 153703504 synonymous variant T/C snv 0.40 0.48 40
rs17235409
SLC11A1
0.653 0.600 2 218395009 missense variant G/A;C snv 4.9E-02; 4.1E-06 31
rs1800450
MBL2
0.662 0.640 10 52771475 missense variant C/T snv 0.14 0.11 26
rs8177374
TIRAP
0.672 0.520 11 126292948 missense variant C/T snv 0.12 0.11 22
rs8193036
IL17A
0.689 0.600 6 52185695 upstream gene variant C/T snv 0.72 21
rs3024490
IL10 ; IL19
0.742 0.520 1 206771966 intron variant A/C;G;T snv 11
rs1518111
IL19 ; IL10
0.790 0.360 1 206771300 intron variant T/C snv 0.71 9
rs3021094
IL10 ; IL19
0.827 0.360 1 206771607 intron variant T/G snv 8.0E-02 8
rs1554286
IL19 ; IL10
0.790 0.320 1 206770888 5 prime UTR variant A/G;T snv 0.72 7
rs897200
STAT4
0.851 0.280 2 191153045 upstream gene variant T/C snv 0.54 4
rs3790622
IL19 ; IL10
0.882 0.320 1 206771818 intron variant G/A snv 1.5E-03 3