Disease: Triple Negative Breast Neoplasms
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10069690
TERT
0.595 0.560 5 1279675 intron variant C/T snv 0.36 53
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1042821
MSH6
0.732 0.280 2 47783349 missense variant G/A;C;T snv 0.18; 8.6E-06 16
rs1052133
OGG1 ; CAMK1
0.476 0.800 3 9757089 missense variant C/G snv 0.27 0.22 147
rs1064793184
FBXO11 ; MSH6
0.851 0.080 2 47791055 missense variant A/G snv 4
rs10771399 0.827 0.080 12 28002147 intergenic variant A/G snv 8.9E-02 5
rs1114167795
FBXO11 ; MSH6
0.851 0.080 2 47799482 missense variant C/T snv 4
rs11540652
TP53
0.592 0.640 17 7674220 missense variant C/A;G;T snv 1.2E-05 57
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs12075
CADM3-AS1 ; ACKR1
0.724 0.240 1 159205564 missense variant G/A snv 0.51 0.66 22
rs1219648
FGFR2
0.716 0.320 10 121586676 intron variant A/G;T snv 17
rs12662670
CCDC170
0.851 0.080 6 151597721 intron variant T/C;G snv 4
rs13000023
LOC101928278 ; LOC105373873
0.851 0.080 2 217059671 downstream gene variant G/A;C;T snv 0.19 4
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs1412125
HMGB1
0.724 0.360 13 30467458 intron variant C/G;T snv 17
rs142030651
EP300
0.851 0.080 22 41117723 missense variant G/A;C snv 6.1E-03 4
rs1436904
AQP4-AS1 ; CHST9
0.851 0.080 18 26990703 intron variant T/G snv 0.35 4
rs144567652
FANCM
0.776 0.200 14 45198718 stop gained C/A;T snv 4.0E-06; 1.0E-03 8
rs1485579458
ERBB2
0.851 0.080 17 39723921 missense variant A/G snv 4.0E-06 4
rs16999593
DNMT1
0.742 0.240 19 10180505 missense variant T/C snv 2.4E-02 9.6E-03 14
rs17217772
MSH2
0.790 0.240 2 47410107 missense variant A/C;G;T snv 5.8E-03 10
rs1726801
POLD1
0.851 0.080 19 50401817 missense variant G/A snv 0.11 0.14 4
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs1800067
ERCC4
0.716 0.320 16 13935176 missense variant G/A snv 5.6E-02 5.3E-02 17
rs1801133
MTHFR
0.472 0.880 1 11796321 missense variant G/A snv 0.31 0.27 174