DisGeNET - a database of gene-disease associations

List of shared variants

Malignant tumor of colon, C0007102

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF GENOME	Num. diseases
rs104894226	LRRC56 ; HRAS	0.658	0.560	11	534285	missense variant	C/A;G;T	snv		29
rs104894230	HRAS ; LRRC56	0.564	0.600	11	534288	missense variant	C/A;G;T	snv		73
rs10741657	CYP2R1	0.637	0.520	11	14893332	upstream gene variant	A/G	snv	0.65	34
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins		214
rs121913273	PIK3CA	0.605	0.440	3	179218294	missense variant	G/A;C	snv		44
rs121913412	CTNNB1	0.724	0.280	3	41224633	missense variant	A/C;G;T	snv		19
rs121913495	GNAS	0.672	0.400	20	58909366	missense variant	G/A;T	snv		28
rs12785878	NADSYN1	0.677	0.520	11	71456403	intron variant	G/A;T	snv		25
rs14035	RAN	0.742	0.320	12	130876696	3 prime UTR variant	C/T	snv	0.33	15
rs1501299	ADIPOQ ; ADIPOQ-AS1	0.597	0.720	3	186853334	intron variant	G/C;T	snv		52
rs1800734	EPM2AIP1 ; MLH1	0.653	0.400	3	36993455	5 prime UTR variant	G/A	snv	0.22	30
rs1800797	IL6 ; IL6-AS1 ; STEAP1B	0.605	0.800	7	22726602	non coding transcript exon variant	A/G	snv	0.72	43
rs1801157	CXCL12	0.611	0.600	10	44372809	3 prime UTR variant	C/T	snv	0.16	46
rs187115	CD44	0.695	0.320	11	35154612	intron variant	T/C	snv	0.37	22
rs2167270	LEP	0.724	0.280	7	128241296	5 prime UTR variant	G/A	snv	0.37	17
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv	0.31	48
rs2282679	GC	0.645	0.480	4	71742666	intron variant	T/G	snv	0.21	38
rs3742330	DICER1	0.662	0.640	14	95087025	3 prime UTR variant	A/G	snv	8.7E-02	24
rs3753584	MTHFR ; CLCN6	0.827	0.080	1	11804529	5 prime UTR variant	T/C	snv	0.14	10
rs3830041	NOTCH4	0.752	0.280	6	32223562	intron variant	C/T	snv	0.11	12
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv		306
rs4696480	TLR2	0.716	0.400	4	153685974	intron variant	T/A	snv	0.45	19
rs4950928	CHI3L1	0.653	0.560	1	203186754	upstream gene variant	G/A;C;T	snv		33
rs6588147	LEPR	0.851	0.080	1	65469811	intron variant	G/A	snv	0.70	4
rs6983267	PCAT1 ; CCAT2 ; CASC8 ; POU5F1B	0.578	0.440	8	127401060	non coding transcript exon variant	G/T	snv	0.37	62