DisGeNET - a database of gene-disease associations

List of shared variants

Colorectal Neoplasms, C0009404

Disease: Squamous cell carcinoma of the head and neck

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1023835002	B2M ; PATL2	0.763	0.280	15	44711547	start lost	A/G;T	snv			10
rs1057519877	B2M ; PATL2	0.763	0.280	15	44711549	start lost	G/A	snv			10
rs113488022	BRAF	0.351	0.840	7	140753336	missense variant	A/C;G;T	snv	4.0E-06		490
rs121913338	BRAF	0.677	0.400	7	140753354	missense variant	T/A;C;G	snv			24
rs121913351	BRAF	0.776	0.240	7	140781611	missense variant	C/A;G;T	snv	4.0E-06		9
rs397516896	BRAF	0.763	0.360	7	140753355	missense variant	C/G;T	snv			11
rs1057519882	CDKN2A	0.807	0.200	9	21974678	missense variant	C/A	snv			7
rs1057519883	CDKN2A	0.742	0.280	9	21971120	missense variant	C/G;T	snv			14
rs1057519884	CREBBP	0.752	0.240	16	3738616	missense variant	C/A;T	snv			11
rs398124146	CREBBP	0.742	0.360	16	3738617	missense variant	G/A;C	snv			12
rs1057519816	ERBB2	0.763	0.200	17	39711955	missense variant	C/A;T	snv			14
rs1057519895	FBXW7	0.724	0.240	4	152328232	missense variant	C/A;G;T	snv			17
rs1057519896	FBXW7	0.742	0.320	4	152326136	missense variant	C/A;T	snv			12
rs149680468	FBXW7	0.742	0.320	4	152326137	missense variant	G/A;C;T	snv			15
rs747241612	FBXW7	0.752	0.240	4	152326215	missense variant	G/C	snv	4.0E-06		12
rs759610249	FBXW7	0.790	0.160	4	152323032	missense variant	C/T	snv	8.0E-06	7.0E-06	8
rs866987936	FBXW7	0.752	0.240	4	152326214	missense variant	C/A;G;T	snv			12
rs867384286	FBXW7	0.732	0.240	4	152328233	missense variant	G/A;C	snv	4.3E-06		14
rs11554273	GNAS	0.689	0.240	20	58909365	missense variant	C/A;G;T	snv	4.0E-06		22
rs121913495	GNAS	0.672	0.400	20	58909366	missense variant	G/A;T	snv			28
rs104894230	HRAS ; LRRC56	0.564	0.600	11	534288	missense variant	C/A;G;T	snv			73
rs121913233	HRAS ; LRRC56	0.627	0.520	11	533874	missense variant	T/A;C;G	snv			37
rs121913502	IDH2	0.708	0.320	15	90088702	missense variant	C/A;T	snv	3.2E-05		19
rs267606870	IDH2	0.763	0.280	15	90088703	missense variant	G/A;C	snv			11
rs104894226	LRRC56 ; HRAS	0.658	0.560	11	534285	missense variant	C/A;G;T	snv			29