Disease: Adenoma of large intestine
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2186607
TRPC6
0.776 0.080 11 101785666 intron variant T/A snv 0.51 10
rs1391441
TET2-AS1 ; TET2
0.763 0.240 4 105207603 intron variant G/A snv 0.70 11
rs1078643
TMEM220-AS1 ; TMEM238L
0.776 0.080 17 10803924 missense variant G/A;C snv 10
rs8000189
COL4A2
0.776 0.080 13 110423534 intron variant C/T snv 0.61 10
rs10980628
LPAR1
0.776 0.080 9 110909123 intron variant T/C snv 0.16 10
rs3087967
C11orf53
0.776 0.080 11 111286111 3 prime UTR variant T/C snv 0.72 10
rs597808
ATXN2
0.742 0.200 12 111535554 intron variant A/G snv 0.67 19
rs12246635
VTI1A
0.776 0.080 10 112528860 intron variant T/C snv 0.13 10
rs755229494
APC
0.776 0.080 5 112761654 intron variant A/G snv 9.6E-04 10
rs1463038513
APC
0.658 0.440 5 112839511 frameshift variant TAAA/- delins 36
rs1801155
APC
0.649 0.440 5 112839514 missense variant T/A snv 8.0E-06; 2.0E-03 1.2E-03 42
rs1801166
APC
0.732 0.200 5 112839543 missense variant G/C snv 4.4E-03 5.6E-03 17
rs11196170
TCF7L2
0.776 0.080 10 112962862 intron variant G/A;C snv 10
rs13086367 0.776 0.080 3 113185041 downstream gene variant A/G snv 0.38 10
rs72942485
BOC
0.776 0.080 3 113280713 intron variant G/A snv 2.7E-02 4.5E-02 10
rs1427760 0.776 0.080 12 114662909 upstream gene variant T/C snv 0.49 10
rs7300312
LOC105370003
0.776 0.080 12 115453117 intergenic variant T/C snv 0.61 10
rs3133285 0.776 0.080 8 116617172 intergenic variant G/C snv 0.19 10
rs16892766 0.716 0.240 8 116618444 intergenic variant A/C snv 9.3E-02 18
rs6469654 0.776 0.080 8 116620726 intergenic variant G/C snv 0.64 10
rs117079142
LOC112268030 ; UTP23
0.776 0.080 8 116778675 intron variant C/A snv 3.0E-02 10
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs78368589
SLC6A18
0.776 0.080 5 1240089 intron variant C/T snv 4.4E-02 10
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs10808555
PCAT1 ; POU5F1B ; CASC8
0.925 0.080 8 127397266 intron variant G/A snv 0.65 6