Disease: Adenoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs113488022
BRAF
0.351 0.840 7 140753336 missense variant A/C;G;T snv 4.0E-06 490
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs121913529
KRAS
0.492 0.680 12 25245350 missense variant C/A;G;T snv 4.0E-06 144
rs121913279
PIK3CA
0.526 0.560 3 179234297 missense variant A/G;T snv 4.0E-06; 4.0E-06 101
rs121913530
KRAS
0.583 0.640 12 25245351 missense variant C/A;G;T snv 63
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 62
rs1801155
APC
0.649 0.440 5 112839514 missense variant T/A snv 8.0E-06; 2.0E-03 1.2E-03 42
rs1463038513
APC
0.658 0.440 5 112839511 frameshift variant TAAA/- delins 36
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs121918464
PTPN11
0.708 0.440 12 112450406 missense variant G/A;C snv 25
rs3802842
COLCA2 ; COLCA1
0.695 0.280 11 111300984 intron variant C/A snv 0.71 25
rs121913409
CTNNB1
0.708 0.400 3 41224646 missense variant C/A;G;T snv 21
rs10795668
LOC105376400
0.724 0.160 10 8659256 upstream gene variant G/A snv 0.24 17
rs1801166
APC
0.732 0.200 5 112839543 missense variant G/C snv 4.4E-03 5.6E-03 17
rs4925386
LAMA5
0.776 0.080 20 62345988 intron variant T/C snv 0.56 14
rs11255841 0.776 0.080 10 8697617 intergenic variant T/A snv 0.25 11
rs7837328
CASC8 ; PCAT1 ; POU5F1B
0.882 0.120 8 127410882 intron variant A/G snv 0.52 8
rs719725 0.827 0.080 9 6365683 intergenic variant A/C snv 0.34 7
rs10808555
PCAT1 ; POU5F1B ; CASC8
0.925 0.080 8 127397266 intron variant G/A snv 0.65 6