DisGeNET - a database of gene-disease associations

List of shared variants

Coronary heart disease, C0010068

Disease: Non-alcoholic Fatty Liver Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1263173		0.925	0.080	11	116810292	downstream gene variant	G/A	snv		0.53	4
rs16996148		0.882	0.120	19	19547663	downstream gene variant	G/T	snv		0.10	8
rs17321515		0.776	0.200	8	125474167	intron variant	A/G	snv		0.49	16
rs2954029		0.807	0.160	8	125478730	intron variant	A/T	snv		0.42	14
rs6982502		0.882	0.080	8	125467120	intron variant	C/T	snv		0.62	6
rs4149313	ABCA1	0.763	0.240	9	104824472	missense variant	T/C	snv			9
rs266729	ADIPOQ	0.637	0.560	3	186841685	upstream gene variant	C/A;G;T	snv			37
rs1501299	ADIPOQ ; ADIPOQ-AS1	0.597	0.720	3	186853334	intron variant	G/C;T	snv			52
rs2241766	ADIPOQ ; ADIPOQ-AS1	0.608	0.720	3	186853103	synonymous variant	T/C;G	snv	8.0E-06; 0.13		48
rs3774261	ADIPOQ ; ADIPOQ-AS1	0.776	0.320	3	186853770	splice region variant	A/G	snv		0.55	10
rs3772622	AGTR1	0.851	0.080	3	148717966	intron variant	T/A;C	snv			4
rs5182	AGTR1	0.742	0.160	3	148741608	synonymous variant	C/T	snv	0.49	0.41	16
rs5186	AGTR1	0.630	0.560	3	148742201	3 prime UTR variant	A/C	snv	0.23	0.21	38
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	116
rs662799	APOA5	0.689	0.480	11	116792991	upstream gene variant	G/A	snv		0.90	33
rs1800777	CETP	0.724	0.280	16	56983407	missense variant	G/A	snv	3.7E-02	2.8E-02	17
rs1130864	CRP	0.672	0.520	1	159713301	3 prime UTR variant	G/A	snv		0.26	27
rs1799883	FABP2	0.658	0.440	4	119320747	missense variant	T/A;C;G	snv	0.73		36
rs3834458	FADS1 ; FADS2	0.807	0.200	11	61827449	intron variant	T/-	del		0.28	7
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs780094	GCKR	0.658	0.400	2	27518370	intron variant	T/C	snv		0.67	62
rs773641005	GOT2	0.742	0.240	16	58723829	missense variant	T/C	snv			14
rs1800730	HFE ; LOC108783645	0.649	0.480	6	26090957	missense variant	A/T	snv	1.0E-02	1.0E-02	32
rs12979860	IFNL4	0.547	0.520	19	39248147	intron variant	C/T	snv		0.39	84
rs2275913	IL17A	0.514	0.760	6	52186235	upstream gene variant	G/A	snv		0.28	105