DisGeNET - a database of gene-disease associations

List of shared variants

Diabetes Mellitus, Insulin-Dependent, C0011854

Disease: Crohn Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs917997		0.701	0.480	2	102454108	downstream gene variant	T/A;C	snv			20
rs2075184		0.724	0.240	2	102464132	intergenic variant	T/C	snv		0.78	14
rs5498	ICAM4 ; ICAM1	0.531	0.760	19	10285007	missense variant	A/G	snv	0.44	0.37	99
rs12720356	TYK2	0.752	0.360	19	10359299	missense variant	A/C;G	snv	6.1E-02; 4.0E-06		12
rs2304256	TYK2	0.732	0.360	19	10364976	missense variant	C/A	snv	0.27	0.23	13
rs62131887		0.724	0.240	19	10476920	intergenic variant	C/T	snv		0.37	14
rs11839053		0.724	0.240	13	106410694	intergenic variant	T/C	snv		7.0E-02	14
rs3184504	SH2B3 ; ATXN2	0.572	0.600	12	111446804	missense variant	T/A;C;G	snv	0.67		92
rs2903692	CLEC16A	0.807	0.360	16	11144926	intron variant	G/A	snv		0.33	6
rs653178	ATXN2	0.672	0.600	12	111569952	intron variant	C/T	snv		0.67	41
rs187238	IL18	0.602	0.680	11	112164265	intron variant	C/A;G	snv			48
rs1946518	IL18	0.602	0.760	11	112164735	intron variant	T/G	snv		0.60	46
rs6679677	PHTF1	0.653	0.320	1	113761186	upstream gene variant	C/A	snv		6.7E-02	26
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs4246905	TNFSF15	0.716	0.400	9	114790969	missense variant	T/A;C	snv	0.76		16
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs6822844		0.689	0.520	4	122588266	regulatory region variant	G/T	snv		0.10	20
rs62324212	IL21-AS1	0.724	0.240	4	122639784	intron variant	C/A;G	snv			15
rs1801282	PPARG	0.500	0.840	3	12351626	missense variant	C/G	snv	0.11	8.9E-02	131
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs2542151		0.763	0.480	18	12779948	upstream gene variant	G/T	snv		0.83	11
rs7042370	LURAP1L-AS1 ; LURAP1L	0.724	0.240	9	12785074	intron variant	T/C	snv		0.58	14
rs1893217	PTPN2	0.742	0.440	18	12809341	intron variant	A/G	snv		0.12	14