DisGeNET - a database of gene-disease associations

List of shared variants

Diabetes Mellitus, Non-Insulin-Dependent, C0011860

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs12980275		0.701	0.360	19	39241143	upstream gene variant	A/G	snv		0.36	23
rs8099917		0.581	0.600	19	39252525	upstream gene variant	T/G	snv		0.16	60
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs1501299	ADIPOQ ; ADIPOQ-AS1	0.597	0.720	3	186853334	intron variant	G/C;T	snv			52
rs184003	AGER	0.724	0.400	6	32182519	intron variant	C/A	snv	0.12	0.12	15
rs2070600	AGER	0.561	0.760	6	32183666	missense variant	C/T	snv	5.3E-02	3.6E-02	82
rs1800625	AGER ; PBX2	0.641	0.680	6	32184665	upstream gene variant	A/G	snv		0.15	39
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	116
rs1044250	ANGPTL4	0.807	0.240	19	8371280	missense variant	C/T	snv	0.30	0.29	12
rs2070150	ATF6	0.827	0.280	1	161791486	missense variant	G/C	snv	0.14	9.2E-02	6
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	272
rs17251221	CASR	0.724	0.360	3	122274400	intron variant	A/G	snv		0.11	18
rs1001179	CAT	0.641	0.680	11	34438684	upstream gene variant	C/T	snv		0.16	33
rs769217	CAT	0.742	0.440	11	34461361	synonymous variant	C/T	snv	0.25	0.22	12
rs1799864	CCR2	0.572	0.680	3	46357717	missense variant	G/A	snv	0.13	0.12	68
rs4950928	CHI3L1	0.653	0.560	1	203186754	upstream gene variant	G/A;C;T	snv			33
rs2794521	CRP	0.742	0.480	1	159715306	upstream gene variant	C/T	snv		0.78	15
rs3093059	CRP	0.752	0.520	1	159715346	upstream gene variant	A/G	snv		0.13	11
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115
rs1801157	CXCL12	0.611	0.600	10	44372809	3 prime UTR variant	C/T	snv		0.16	46
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs10741657	CYP2R1	0.637	0.520	11	14893332	upstream gene variant	A/G	snv		0.65	34
rs1993116	CYP2R1	0.827	0.200	11	14888688	intron variant	A/G	snv		0.65	8
rs13078	DICER1	0.827	0.280	14	95090410	3 prime UTR variant	A/T	snv		0.85	5
rs3742330	DICER1	0.662	0.640	14	95087025	3 prime UTR variant	A/G	snv		8.7E-02	24