Disease: Metabolic Syndrome X
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1799945
LOC108783645 ; HFE
0.452 0.760 6 26090951 missense variant C/G;T snv 0.11 0.10 226
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs1800610
TNF
0.807 0.320 6 31576050 intron variant G/A snv 8.4E-02 7
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs1800625
AGER ; PBX2
0.641 0.680 6 32184665 upstream gene variant A/G snv 0.15 39
rs1800629
TNF
0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 169
rs1884051
ESR1
0.882 0.080 6 151962144 intron variant G/A snv 0.60 4
rs2010963
VEGFA
0.542 0.840 6 43770613 5 prime UTR variant C/G snv 0.68 82
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131
rs5370
EDN1
0.630 0.520 6 12296022 missense variant G/T snv 0.23 0.21 37
rs6921438 0.776 0.360 6 43957870 intergenic variant G/A;C snv 10
rs6923761
GLP1R
0.851 0.200 6 39066296 missense variant G/A;C snv 0.23; 4.0E-06 4
rs6929846
BTN2A1
0.827 0.160 6 26458037 5 prime UTR variant T/C snv 0.70 10
rs9465871
CDKAL1
0.882 0.120 6 20717024 intron variant T/C snv 0.30 4
rs997509
ENPP1
0.827 0.200 6 131846837 intron variant C/T snv 5.3E-02 6
rs10247649
PDK4
0.925 0.080 7 95586935 non coding transcript exon variant A/G snv 0.43 2
rs16139
NPY ; LOC107986777
0.658 0.560 7 24285260 missense variant T/A;C snv 4.0E-06; 3.0E-02 36
rs16147
LOC107986777 ; NPY
0.695 0.400 7 24283791 upstream gene variant T/C snv 0.48 18
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs1800796
IL6-AS1 ; STEAP1B ; IL6
0.555 0.760 7 22726627 non coding transcript exon variant G/C snv 9.9E-02 74
rs1800797
IL6 ; IL6-AS1 ; STEAP1B
0.605 0.800 7 22726602 non coding transcript exon variant A/G snv 0.72 43
rs55951658
CYP3A4
0.827 0.200 7 99770202 missense variant T/A;C snv 4.1E-04 9.8E-05 7
rs662
PON1
0.485 0.840 7 95308134 missense variant T/C snv 0.38 0.42 157
rs6947830 0.925 0.080 7 15025359 intergenic variant G/A;C snv 2
rs7799039
LOC105375494
0.649 0.560 7 128238730 upstream gene variant G/A;C snv 33