DisGeNET - a database of gene-disease associations

List of associated variants

Gastritis, Atrophic, C0017154

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs2294008	PSCA ; JRK	0.672	0.320	8	142680513	5 prime UTR variant	C/T	snv	0.46	0.45	28
rs12229892	PTPN11	0.807	0.240	12	112485589	intron variant	G/A	snv		1.4E-02	6
rs2301756	PTPN11	0.851	0.120	12	112452972	intron variant	A/G	snv		0.21	4
rs12423190	PTPN11	1.000	0.040	12	112471536	intron variant	T/C	snv		8.7E-02	1
rs760805	RUNX3 ; LOC107984932	0.776	0.240	1	24925432	intron variant	A/T	snv		0.42	9
rs1886753	TDRG1	1.000	0.040	6	40359357	non coding transcript exon variant	C/T	snv		0.42	1
rs3814896	TFF2 ; LOC105372815	0.882	0.080	21	42351602	upstream gene variant	A/G	snv		0.17	3
rs4833095	TLR1	0.662	0.480	4	38798089	missense variant	T/C	snv	0.38	0.44	28
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs11536878	TLR4	0.827	0.240	9	117709275	intron variant	C/A	snv		9.5E-02	5
rs2607775	XPC ; LSM3	0.807	0.160	3	14178595	5 prime UTR variant	C/G	snv	0.42	0.43	8