DisGeNET - a database of gene-disease associations

List of shared variants

Glioma, C0017638

Disease: Carcinoma of lung

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs2307191	XRCC1	0.827	0.120	19	43553616	missense variant	G/A	snv	1.2E-03	4.8E-03	5
rs72554204	XRCC1	0.827	0.120	19	43546062	missense variant	C/T	snv	1.2E-04	1.3E-04	5
rs199613843	XRCC1	0.807	0.160	19	43551609	synonymous variant	C/T	snv	4.0E-06	7.0E-06	6
rs2158041	AHR	0.807	0.160	7	17328796	intron variant	T/C	snv		0.81	6
rs5744533	POLK ; CERT1	0.807	0.120	5	75510279	intron variant	C/A;T	snv			6
rs148611340	XRCC1	0.790	0.120	19	43543621	missense variant	G/A;C	snv	4.0E-06; 1.2E-05		7
rs1214285376	XRCC1	0.776	0.200	19	43543490	missense variant	G/T	snv	4.0E-06		8
rs2243248	IL4	0.763	0.240	5	132672952	upstream gene variant	T/A;C;G	snv			9
rs7904519	TCF7L2	0.763	0.240	10	113014168	intron variant	A/G	snv		0.55	9
rs11196067	VTI1A	0.752	0.160	10	112709306	intron variant	A/T	snv		0.32	10
rs843720	ACYP2 ; LOC105374610	0.752	0.280	2	54283523	intron variant	T/G	snv		0.52	10
rs1805388	LIG4	0.790	0.120	13	108211243	missense variant	G/A	snv	0.18	0.16	11
rs1625895	TP53	0.752	0.200	17	7674797	non coding transcript exon variant	T/A;C;G	snv	9.1E-06; 0.86; 4.5E-06		13
rs3136038	ERCC4	0.763	0.200	16	13919522	upstream gene variant	C/T	snv		0.36	13
rs2075685	TMEM167A ; XRCC4	0.724	0.320	5	83076846	intron variant	G/A;T	snv			14
rs1800371	TP53	0.742	0.240	17	7676230	missense variant	G/A;T	snv	1.2E-03		15
rs10506868	VTI1A	0.716	0.160	10	112559621	intron variant	C/T	snv		3.1E-02	16
rs12241008	VTI1A	0.716	0.160	10	112520943	intron variant	T/C	snv		0.13	16
rs2151280	CDKN2B-AS1	0.701	0.360	9	22034720	non coding transcript exon variant	G/A	snv		0.46	16
rs7003908	PRKDC	0.716	0.320	8	47858141	intron variant	C/A	snv		0.66	16
rs1800067	ERCC4	0.716	0.320	16	13935176	missense variant	G/A	snv	5.6E-02	5.3E-02	17
rs11196172	TCF7L2	0.708	0.200	10	112967084	intron variant	G/A	snv		0.13	18
rs1273593548	PIK3CG	0.716	0.160	7	106867593	missense variant	T/G	snv	8.4E-06		19
rs1805377	XRCC4	0.689	0.480	5	83353124	splice acceptor variant	G/A	snv	0.23	0.25	19
rs2853677	TERT	0.724	0.240	5	1287079	3 prime UTR variant	G/A	snv		0.63	19