DisGeNET - a database of gene-disease associations

List of associated variants

IGA Glomerulonephritis, C0017661

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs5882115	C1GALT1	1.000	0.120	7	7233965	intron variant	-/C	delins		7.6E-02	1
rs1799752	ACE	0.677	0.480	17	63488529	intron variant	-/TTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCATACAGTCACTTTT	delins			25
rs5186	AGTR1	0.630	0.560	3	148742201	3 prime UTR variant	A/C	snv	0.23	0.21	38
rs4646	MIR4713HG ; CYP19A1	0.716	0.360	15	51210647	3 prime UTR variant	A/C	snv	0.67	0.70	16
rs854560	PON1	0.513	0.800	7	95316772	missense variant	A/C;G;N;T	snv	0.29		113
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs9138	SPP1	0.776	0.360	4	87983190	3 prime UTR variant	A/C;T	snv			12
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs699	AGT	0.501	0.800	1	230710048	missense variant	A/G	snv	0.55	0.58	134
rs4880	SOD2	0.500	0.840	6	159692840	missense variant	A/G	snv	0.48	0.47	131
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs16944	IL1B	0.531	0.920	2	112837290	upstream gene variant	A/G	snv		0.57	92
rs3077	HLA-DPA1	0.701	0.440	6	33065245	3 prime UTR variant	A/G	snv		0.29	16
rs9277535	HLA-DPB1	0.724	0.440	6	33087084	3 prime UTR variant	A/G	snv		0.25	13
rs660895	HLA-DRB1	0.752	0.360	6	32609603	intergenic variant	A/G	snv		0.19	10
rs3803800	TNFSF13 ; TNFSF12-TNFSF13	0.807	0.240	17	7559652	missense variant	A/G	snv	0.70	0.64	7
rs3218977	IL1R2	0.807	0.240	2	102024739	3 prime UTR variant	A/G	snv		0.14	6
rs859	STARD5 ; IL16	0.807	0.200	15	81308981	3 prime UTR variant	A/G	snv		0.33	6
rs9275224		0.851	0.200	6	32692101	TF binding site variant	A/G	snv		0.53	5
rs2856717		1.000	0.120	6	32702531	downstream gene variant	A/G	snv		0.64	2
rs17019602	VAV3	1.000	0.120	1	107646236	intron variant	A/G	snv		0.19	1
rs2072392	BID	1.000	0.120	22	17743846	synonymous variant	A/G	snv	2.8E-02	4.1E-02	1
rs2738048		1.000	0.120	8	6965263	downstream gene variant	A/G	snv		0.28	1
rs4288398		1.000	0.120	8	7024116	downstream gene variant	A/G	snv		0.70	1
rs761991666	C1GALT1	1.000	0.120	7	7234516	missense variant	A/G	snv	4.0E-06	7.0E-06	1