Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79 59
rs2292832
MIR149 ; GPC1 ; LOC100130449
0.605 0.640 2 240456086 non coding transcript exon variant T/A;C snv 0.59 46
rs3087243
CTLA4
0.623 0.720 2 203874196 downstream gene variant G/A snv 0.37 44
rs352140
TLR9
0.630 0.680 3 52222681 synonymous variant C/A;G;T snv 2.0E-05; 0.49 42
rs653178
ATXN2
0.672 0.600 12 111569952 intron variant C/T snv 0.67 41
rs2736340 0.683 0.480 8 11486464 upstream gene variant C/T snv 0.25 22
rs6822844 0.689 0.520 4 122588266 regulatory region variant G/T snv 0.10 20
rs917997 0.701 0.480 2 102454108 downstream gene variant T/A;C snv 20
rs706778
IL2RA
0.695 0.320 10 6056986 intron variant C/T snv 0.46 19
rs4810485
CD40
0.732 0.480 20 46119308 intron variant T/A;G snv 16
rs6920220 0.742 0.440 6 137685367 intron variant G/A snv 0.16 14
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12 14
rs11221332
ETS1
0.763 0.280 11 128511079 intron variant C/A;T snv 13
rs10488631
TNPO3
0.742 0.280 7 128954129 upstream gene variant T/C snv 9.0E-02 13
rs548234
ATG5
0.763 0.360 6 106120159 intron variant C/T snv 0.76 11
rs2327832 0.790 0.320 6 137651931 intergenic variant A/G snv 0.16 10
rs3130544 0.807 0.360 6 31090563 intergenic variant C/A snv 7.4E-02 10
rs951005 0.807 0.200 9 34743684 intron variant G/A snv 0.78 10
rs6840978
IL21-AS1
0.776 0.160 4 122633552 intron variant C/T snv 0.16 10
rs11568821
LOC105373977 ; PDCD1
0.827 0.200 2 241851760 intron variant C/G;T snv 10
rs4819388
ICOSLG
0.790 0.240 21 44227538 3 prime UTR variant T/C snv 9
rs1678542
KIF5A
0.790 0.320 12 57574932 intron variant C/G snv 0.42 9
rs1738074
LOC105378083 ; LOC107986664 ; TAGAP
0.790 0.320 6 159044945 5 prime UTR variant T/C snv 0.49 9