DisGeNET - a database of gene-disease associations

List of shared variants

Irritable Bowel Syndrome, C0022104

Disease: Ulcerative Colitis

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800629	TNF	0.472	0.920	6	31575254	upstream gene variant	G/A	snv	0.12	0.14	169
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs324420	FAAH	0.637	0.440	1	46405089	missense variant	C/A	snv	0.24	0.26	48
rs2241880	SCARNA5 ; ATG16L1	0.627	0.600	2	233274722	missense variant	A/G	snv	0.45	0.44	37
rs2104286	IL2RA	0.662	0.440	10	6057082	intron variant	T/C	snv		0.18	25
rs1861494	IFNG-AS1 ; IFNG	0.716	0.400	12	68157629	intron variant	C/T	snv		0.75	15
rs224222	MEFV	0.724	0.440	16	3254463	missense variant	C/T	snv	0.24	0.21	15
rs11465804	IL23R	0.752	0.320	1	67236843	intron variant	T/G	snv	4.4E-02	5.4E-02	10
rs6478108	TNFSF15	0.763	0.200	9	114796423	intron variant	C/T	snv		0.73	10
rs1248696	DLG5	0.807	0.080	10	77856847	missense variant	T/A;C	snv	0.93		8
rs4263839	TNFSF15	0.807	0.160	9	114804160	intron variant	A/G	snv		0.75	7
rs11190140	NKX2-3 ; LINC01475	0.827	0.160	10	99531836	upstream gene variant	T/C	snv		0.55	6
rs1384936174	NOD2	0.827	0.040	16	50710812	missense variant	G/A;T	snv	4.0E-06; 4.0E-06		6
rs3129891		0.851	0.160	6	32447303	downstream gene variant	G/A	snv		0.20	5