DisGeNET - a database of gene-disease associations

List of shared variants

Leishmaniasis, Visceral, C0023290

Disease: Leishmaniasis, Cutaneous

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs5743708	TLR2	0.525	0.800	4	153705165	missense variant	G/A	snv	1.7E-02	1.8E-02	98
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs17235416	SLC11A1	0.807	0.200	2	218395091	3 prime UTR variant	TGTG/-	del		8.4E-02	6
rs17221959	SLC11A1	0.882	0.160	2	218387907	synonymous variant	C/T	snv	7.0E-02	0.12	3
rs2279015	SLC11A1	0.882	0.080	2	218394547	non coding transcript exon variant	G/A	snv		0.51	3