Disease: Nasopharyngeal carcinoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs25487
XRCC1
0.441 0.800 19 43551574 missense variant T/C snv 0.68 0.71 205
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs11614913
HOXC6 ; MIR196A2
0.512 0.760 12 53991815 mature miRNA variant C/T snv 0.39 0.34 111
rs1353702185
MDM2
0.550 0.720 12 68839311 missense variant C/G snv 4.0E-06 79
rs28934576
TP53
0.554 0.600 17 7673802 missense variant C/A;G;T snv 4.0E-06; 1.6E-05 78
rs17576
MMP9
0.557 0.760 20 46011586 missense variant A/G snv 0.39 0.36 73
rs11540652
TP53
0.592 0.640 17 7674220 missense variant C/A;G;T snv 1.2E-05 57
rs121912651
TP53
0.605 0.680 17 7674221 missense variant G/A;C snv 4.0E-06 53
rs28934578
TP53
0.605 0.600 17 7675088 missense variant C/A;T snv 4.0E-06 47
rs872071
IRF4
0.742 0.360 6 411064 3 prime UTR variant A/G;T snv 13
rs735665
GRAMD1B
0.776 0.280 11 123490689 intron variant G/A snv 0.15 8
rs13397985
SP110 ; SP140
0.827 0.280 2 230226508 intron variant T/C;G snv 5
rs17483466
MIR4435-2HG ; ACOXL
0.827 0.280 2 111039881 intron variant A/G snv 0.15 5
rs2456449
CASC19 ; PCAT1
0.827 0.280 8 127180736 intron variant A/G snv 0.30 5
rs305061 0.851 0.280 16 85942053 intron variant C/A;T snv 4
rs7176508
DRAIC
0.851 0.280 15 69726651 intron variant A/G snv 0.67 4
rs757978
FARP2
0.851 0.200 2 241431686 missense variant C/A;T snv 4.1E-06; 9.3E-02 4
rs11083846
PRKD2
0.882 0.200 19 46704397 splice region variant G/A snv 0.17 0.16 3
rs11668878
FKRP
0.925 0.200 19 46765116 intron variant G/T snv 5.1E-02 2
rs7169431 0.925 0.200 15 56048698 intergenic variant A/G;T snv 2