DisGeNET - a database of gene-disease associations

List of shared variants

Liver Cirrhosis, C0023890

Disease: Hepatitis C

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	262
rs2596542	MICA-AS1 ; MICA	0.724	0.200	6	31398818	upstream gene variant	C/T	snv		0.41	18
rs2596538	MICA ; MICA-AS1	0.851	0.160	6	31400855	intron variant	G/A	snv		0.41	5
rs1800629	TNF	0.472	0.920	6	31575254	upstream gene variant	G/A	snv	0.12	0.14	169
rs5998152	DEPDC5	0.827	0.160	22	31867176	intron variant	T/C	snv		0.37	5
rs1012068	DEPDC5	0.827	0.160	22	31869917	intron variant	T/G	snv		0.37	5
rs1127354	ITPA	0.667	0.400	20	3213196	missense variant	C/A;G	snv	7.5E-02		26
rs7270101	ITPA	0.776	0.200	20	3213247	intron variant	A/C	snv	8.7E-02	9.7E-02	10
rs910049	TSBP1-AS1 ; TSBP1	0.776	0.400	6	32347950	intron variant	T/C	snv		0.76	8
rs3135363		0.776	0.360	6	32421871	intergenic variant	A/G	snv		0.24	8
rs3077	HLA-DPA1	0.701	0.440	6	33065245	3 prime UTR variant	A/G	snv		0.29	16
rs9380516		0.925	0.120	6	35534425	TF binding site variant	T/C	snv		0.85	2
rs6897932	IL7R	0.683	0.560	5	35874473	missense variant	C/T	snv	0.23	0.21	25
rs12980275		0.701	0.360	19	39241143	upstream gene variant	A/G	snv		0.36	23
rs12979860	IFNL4	0.547	0.520	19	39248147	intron variant	C/T	snv		0.39	84
rs8099917		0.581	0.600	19	39252525	upstream gene variant	T/G	snv		0.16	60
rs1800471	TGFB1	0.597	0.840	19	41352971	missense variant	C/G;T	snv	5.6E-02		48
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs738409	PNPLA3	0.557	0.720	22	43928847	missense variant	C/G	snv	0.28	0.22	88
rs4898	TIMP1 ; SYN1 ; MIR4769	0.672	0.520	X	47585586	synonymous variant	T/C	snv	0.46	0.46	25
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs1544410	VDR	0.542	0.760	12	47846052	intron variant	C/A;G;T	snv			78
rs641738	LOC112268246 ; TMC4 ; MBOAT7	0.689	0.320	19	54173068	missense variant	T/A;C;G	snv			22
rs4074	CXCL1	0.827	0.200	4	73870427	intron variant	A/G	snv		0.46	6
rs72613567	HSD17B13	0.742	0.320	4	87310240	splice donor variant	-/A	delins	0.22		14