DisGeNET - a database of gene-disease associations

List of shared variants

Lupus Erythematosus, Systemic, C0024141

Disease: Multiple Sclerosis

Source: GWASDB ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs9275572		0.724	0.360	6	32711222	upstream gene variant	A/G;T	snv			9
rs7574865	STAT4	0.574	0.720	2	191099907	intron variant	T/G	snv		0.79	8
rs9271366		0.807	0.240	6	32619077	intergenic variant	G/A	snv		0.86	8
rs10488631	TNPO3	0.742	0.280	7	128954129	upstream gene variant	T/C	snv		9.0E-02	7
rs2736340		0.683	0.480	8	11486464	upstream gene variant	C/T	snv		0.25	7
rs3130564	PSORS1C1	0.790	0.360	6	31133897	intron variant	C/T	snv		0.14	5
rs7453920	HLA-DQB2	0.752	0.440	6	32762235	intron variant	A/G;T	snv			5
rs2051549	HLA-DQB2	0.851	0.280	6	32762309	intron variant	G/A	snv		0.64	4
rs3130299		0.851	0.240	6	32235760	regulatory region variant	A/G	snv		0.24	4
rs3130320	TSBP1-AS1	0.851	0.160	6	32255481	intron variant	T/C	snv		0.68	4
rs389883	CYP21A2 ; STK19	0.827	0.200	6	31979683	non coding transcript exon variant	G/T	snv		0.80	4
rs548234	ATG5	0.763	0.360	6	106120159	intron variant	C/T	snv		0.76	4
rs9268832	HLA-DRB9	0.882	0.160	6	32460012	non coding transcript exon variant	T/C	snv	0.61	0.59	4
rs2242665	CYP21A2 ; SLC44A4	0.882	0.160	6	31871532	missense variant	C/T	snv	0.60	0.60	3
rs2431697		0.776	0.240	5	160452971	intron variant	T/C	snv		0.44	3
rs437179	SKIV2L ; CYP21A2	0.882	0.160	6	31961237	missense variant	A/C	snv	0.76	0.78	3
rs535586	EHMT2 ; CYP21A2	0.882	0.160	6	31892560	splice region variant	T/A;C	snv	0.77		3
rs630379	NELFE ; CYP21A2	0.882	0.200	6	31954477	intron variant	A/C	snv	0.77	0.79	3
rs644827	SLC44A4 ; CYP21A2	0.882	0.160	6	31870664	missense variant	T/C	snv	0.60	0.60	3
rs659445	EHMT2 ; CYP21A2 ; C2	0.882	0.160	6	31896527	intron variant	G/A;C	snv	0.77	0.76	3
rs660550	SLC44A4 ; CYP21A2	0.882	0.160	6	31869500	intron variant	C/A;G	snv	0.60		3
rs10516487	BANK1	0.752	0.360	4	101829919	missense variant	G/A;T	snv	0.26; 8.0E-06		2
rs2205960	TNFSF4	0.763	0.400	1	173222336	intergenic variant	G/A;T	snv			2
rs4963128	PHRF1	0.882	0.120	11	589564	intron variant	T/C	snv		0.64	2
rs6445975	PXK	0.851	0.160	3	58384450	intron variant	G/T	snv		0.63	2