DisGeNET - a database of gene-disease associations

List of associated variants

Lymphoma, C0024299

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs121913237	NRAS	0.611	0.560	1	114716126	missense variant	C/A;G;T	snv	8.0E-06		50
rs1800890	IL19	0.658	0.400	1	206776020	intron variant	A/T	snv		0.32	29
rs6676671	IL19	0.882	0.160	1	206779403	intron variant	T/A	snv		0.32	4
rs10494879	IL19	0.925	0.120	1	206778859	intron variant	C/A;G	snv		0.36	3
rs1351687973	TP73	0.925	0.120	1	3731497	missense variant	G/A	snv	1.6E-05		3
rs2466571	CD46	0.925	0.120	1	207766701	intron variant	G/T	snv		0.46	3
rs535311760	TP73	0.925	0.120	1	3730979	missense variant	G/A	snv	1.2E-05; 8.2E-06		3
rs1057519781	ALK	0.807	0.160	2	29209816	missense variant	C/G	snv			9
rs10190751	CFLAR-AS1 ; CFLAR	0.882	0.120	2	201141373	splice acceptor variant	G/A	snv	0.18	0.26	4
rs387907272	MYD88	0.572	0.520	3	38141150	stop lost	T/C	snv	5.2E-05	7.0E-06	73
rs995922697	GPX1	0.724	0.560	3	49357413	missense variant	A/G	snv	4.1E-06		15
rs6773854	LOC105374265	1.000	0.120	3	187931631	downstream gene variant	T/C	snv		0.23	2
rs4073	CXCL8	0.566	0.800	4	73740307	upstream gene variant	A/T	snv		0.46	64
rs28362491	LOC105377621 ; NFKB1	0.592	0.720	4	102500998	non coding transcript exon variant	ATTG/-	delins			56
rs121913482	FGFR3	0.630	0.680	4	1801837	missense variant	C/T	snv			45
rs121913105	FGFR3	0.653	0.600	4	1806163	missense variant	A/C;T	snv			30
rs121913485	FGFR3	0.716	0.400	4	1804372	missense variant	A/G	snv			18
rs2227307	CXCL8	0.851	0.240	4	73740952	intron variant	T/G	snv		0.45	6
rs1257715362	MAPK10 ; ARHGAP24	0.925	0.120	4	85995065	missense variant	A/G	snv		7.0E-06	3