DisGeNET - a database of gene-disease associations

List of associated variants

Lymphoma, Non-Hodgkin, C0024305

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1137101	LEPR	0.554	0.760	1	65592830	missense variant	A/G	snv	0.51	0.50	77
rs1136410	PARP1	0.559	0.760	1	226367601	missense variant	A/G	snv	0.21	0.15	70
rs1801274	FCGR2A	0.597	0.800	1	161509955	missense variant	A/C;G	snv	4.0E-06; 0.48		46
rs1800890	IL19	0.658	0.400	1	206776020	intron variant	A/T	snv		0.32	29
rs1039659576	MTR	0.689	0.520	1	236803473	missense variant	A/G	snv			21
rs4245739	MDM4	0.708	0.360	1	204549714	3 prime UTR variant	C/A;G	snv	0.77; 6.2E-06		21
rs1256046734	LEPR	0.763	0.280	1	65621409	missense variant	A/G	snv		7.0E-06	12
rs201765376	MTR	0.732	0.360	1	236838504	synonymous variant	C/T	snv	1.6E-05	1.4E-05	12
rs1052576	CASP9	0.807	0.200	1	15506048	missense variant	T/A;C	snv	0.53		9
rs12711521	MASP2 ; TARDBP	0.807	0.240	1	11030859	missense variant	C/A	snv	0.74	0.63	7
rs1353759920	TP73	0.851	0.120	1	3707593	missense variant	C/A	snv		2.1E-05	4
rs1041163	VCAM1	0.882	0.160	1	100718269	upstream gene variant	T/C	snv		0.18	3
rs121908689	RAD54L ; LRRC41	0.925	0.120	1	46272758	missense variant	T/A	snv			2
rs207186		0.925	0.120	1	55359252	intron variant	C/T	snv		7.7E-03	2
rs4661636	CASP9	0.925	0.160	1	15496566	intron variant	C/T	snv		0.24	2
rs61733010	AKR1A1	0.925	0.120	1	45561805	missense variant	C/G;T	snv	4.0E-06; 4.3E-04	1.9E-03	2
rs1800893	IL19 ; IL10	1.000	0.120	1	206773822	intron variant	C/T	snv		0.41	1
rs766588452	LEPR	1.000	0.120	1	65621389	missense variant	A/C;G	snv	8.0E-06; 2.0E-05		1
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115