DisGeNET - a database of gene-disease associations

List of associated variants

Lymphoma, Non-Hodgkin, C0024305

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs4661636	CASP9	0.925	0.160	1	15496566	intron variant	C/T	snv		0.24	2
rs1052576	CASP9	0.807	0.200	1	15506048	missense variant	T/A;C	snv	0.53		9
rs6449182	CD38	0.807	0.160	4	15778830	intron variant	C/G	snv		0.22	6
rs56287471	LOC107986469 ; IL12B	1.000	0.120	5	159323135	missense variant	C/T	snv	3.8E-04	1.5E-03	1
rs754651345	IL12B ; LOC107986469	1.000	0.120	5	159326751	missense variant	A/G	snv	4.0E-06		1
rs4880	SOD2	0.500	0.840	6	159692840	missense variant	A/G	snv	0.48	0.47	131
rs1003421753	IL12A ; IL12A-AS1	1.000	0.120	3	159989088	missense variant	C/T	snv			1
rs1921310	TANK	1.000	0.120	2	161192690	intron variant	A/G	snv		0.15	1
rs1801274	FCGR2A	0.597	0.800	1	161509955	missense variant	A/C;G	snv	4.0E-06; 0.48		46
rs351855	FGFR4	0.597	0.560	5	177093242	missense variant	G/A	snv	0.33	0.26	58
rs147603016	FGFR4	0.925	0.160	5	177093286	synonymous variant	G/A;C	snv	1.5E-04; 8.2E-06		3
rs1979277	SHMT1	0.620	0.560	17	18328782	missense variant	G/A	snv	0.27	0.31	45
rs1335035506	SHMT1	1.000	0.120	17	18340207	missense variant	A/G	snv	4.0E-06	1.4E-05	1
rs148701087	SHMT1 ; MIR6778	1.000	0.120	17	18340762	missense variant	G/A	snv	6.4E-04	8.8E-04	1
rs1799931	NAT2	0.742	0.320	8	18400860	missense variant	G/A	snv	5.8E-02	3.9E-02	14
rs6948	CASP3	1.000	0.120	4	184627976	3 prime UTR variant	G/T	snv		0.48	3
rs1049216	CASP3	0.790	0.200	4	184628935	3 prime UTR variant	A/G	snv		0.27	9
rs3817198	LSP1	0.790	0.280	11	1887776	intron variant	T/C	snv		0.26	8
rs3900115	CASP10	1.000	0.120	2	201185954	synonymous variant	A/G	snv	0.45	0.49	3
rs3834129	CASP8	0.627	0.560	2	201232809	upstream gene variant	AGTAAG/-	del		0.48	38
rs6736233	CASP8	1.000	0.120	2	201254251	intron variant	G/C	snv		0.16	1
rs3769821	CASP8	0.851	0.200	2	201258707	intron variant	C/T	snv		0.57	4
rs113686495	CASP8	0.925	0.160	2	201258757	intron variant	ATTCTGTC/-	delins			4
rs13113	CASP8	0.925	0.200	2	201287439	3 prime UTR variant	T/A	snv		0.33	2
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115