Disease: Glioma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs621559
CFAP57 ; LOC105378685 ; EBNA1BP2
0.827 0.080 1 43179740 intron variant G/A snv 0.18 5
rs148611340
XRCC1
0.790 0.120 19 43543621 missense variant G/A;C snv 4.0E-06; 1.2E-05 7
rs773919809
MGMT
0.763 0.200 10 129766957 missense variant C/T snv 2.0E-05 13
rs13361189 0.752 0.240 5 150843825 upstream gene variant T/C snv 0.21 13
rs398652 0.752 0.240 14 56058851 intergenic variant G/A snv 0.24 10
rs1799931
NAT2
0.742 0.320 8 18400860 missense variant G/A snv 5.8E-02 3.9E-02 14
rs2276466
ERCC4
0.732 0.320 16 13949318 3 prime UTR variant C/A;G snv 15
rs4444903
EGF
0.630 0.360 4 109912954 5 prime UTR variant A/G snv 0.51 35
rs2298881
ERCC1
0.653 0.400 19 45423658 intron variant C/A;T snv 25
rs3212986
CD3EAP ; ERCC1
0.620 0.400 19 45409478 stop gained C/A;G;T snv 0.29; 4.3E-06; 4.3E-06 42
rs12826786 0.683 0.480 12 53961717 upstream gene variant C/T snv 0.38 26
rs12917
MGMT ; LOC105378560
0.605 0.480 10 129708019 missense variant C/T snv 0.14 0.14 45
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36
rs1870377
KDR
0.695 0.520 4 55106807 missense variant T/A snv 0.22 0.20 25
rs17655
BIVM-ERCC5 ; ERCC5
0.597 0.560 13 102875652 missense variant G/C snv 0.28 0.30 52
rs5275
PTGS2
0.583 0.560 1 186673926 3 prime UTR variant A/G;T snv 55
rs1805794
NBN
0.605 0.600 8 89978251 missense variant C/G snv 0.35 0.31 41
rs20417
PACERR ; PTGS2
0.576 0.600 1 186681189 non coding transcript exon variant C/G;T snv 57
rs833061
VEGFA
0.605 0.600 6 43769749 upstream gene variant C/G;T snv 42
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs1799793
ERCC2
0.557 0.640 19 45364001 missense variant C/A;T snv 7.1E-06; 0.29 72
rs4938723
MIR34C ; BTG4 ; MIR34B ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32 60
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs861539
KLC1 ; XRCC3
0.519 0.680 14 103699416 missense variant G/A snv 0.29 0.30 104
rs1353702185
MDM2
0.550 0.720 12 68839311 missense variant C/G snv 4.0E-06 79