Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs1801394
FASTKD3 ; MTRR
0.531 0.840 5 7870860 missense variant A/G snv 0.47 0.45 101
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79 59
rs1801275
IL4R
0.581 0.680 16 27363079 missense variant A/G snv 0.25 0.36 58
rs1883832
CD40
0.581 0.680 20 46118343 5 prime UTR variant T/C snv 0.75 0.80 52
rs3087243
CTLA4
0.623 0.720 2 203874196 downstream gene variant G/A snv 0.37 44
rs2187668
LOC107986589 ; HLA-DQA2 ; HLA-DQA1
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03 20
rs11558538
LOC107985948 ; HNMT
0.695 0.400 2 138002079 missense variant C/T snv 1.0E-01 8.4E-02 19
rs8321
ZNRD1
0.742 0.320 6 30064745 3 prime UTR variant A/C snv 5.4E-02 5.9E-02 16
rs1569686
DNMT3B
0.752 0.400 20 32779273 intron variant G/A;C;T snv 15
rs3087456
CIITA ; LOC105371080
0.742 0.480 16 10877045 intron variant G/A snv 0.53 14
rs2855812
MICB
0.790 0.360 6 31504943 intron variant G/T snv 0.23 13
rs3099844
MICB-DT
0.732 0.400 6 31481199 non coding transcript exon variant C/A snv 0.11 13
rs733618
CTLA4
0.763 0.440 2 203866221 upstream gene variant T/C snv 0.10 12
rs1805010
IL4R
0.752 0.400 16 27344882 missense variant A/C;G;T snv 0.45 12
rs1270942
CFB ; CYP21A2
0.742 0.440 6 31951083 non coding transcript exon variant A/G snv 7.5E-02 11
rs3130544 0.807 0.360 6 31090563 intergenic variant C/A snv 7.4E-02 10
rs1980493
BTNL2 ; TSBP1-AS1
0.776 0.400 6 32395438 intron variant T/C snv 0.13 10
rs3130380
HCG18 ; HCG17
0.807 0.280 6 30311353 intron variant G/A snv 6.6E-02 10
rs886424
LINC00243
0.776 0.320 6 30814225 non coding transcript exon variant C/T snv 7.1E-02 8.7E-02 10
rs3131379
MSH5 ; MSH5-SAPCD1
0.752 0.440 6 31753256 intron variant G/A snv 6.4E-02 7.9E-02 10
rs9261290
RNF39
0.807 0.280 6 30070870 3 prime UTR variant T/C;G snv 5.2E-02; 7.2E-06 10
rs389884
STK19 ; CYP21A2 ; DXO
0.776 0.440 6 31973120 non coding transcript exon variant A/G snv 7.1E-02 10
rs2857595 0.827 0.320 6 31600692 intergenic variant G/A snv 0.27 9