Disease: Squamous cell carcinoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs112445441
KRAS
0.658 0.400 12 25245347 missense variant C/A;G;T snv 32
rs486907
RNASEL
0.667 0.360 1 182585422 missense variant C/T snv 0.31 0.28 32
rs17577
SLC12A5-AS1 ; MMP9
0.649 0.520 20 46014472 missense variant G/A;C snv 0.16 31
rs11549467
HIF1A ; HIF1A-AS3
0.653 0.400 14 61740857 missense variant G/A snv 8.9E-03 7.0E-03 30
rs1800734
EPM2AIP1 ; MLH1
0.653 0.400 3 36993455 5 prime UTR variant G/A snv 0.22 30
rs735482
CD3EAP ; ERCC1
0.742 0.160 19 45408744 missense variant A/C snv 0.21 0.20 16
rs1057519824
MET
0.807 0.120 7 116783374 missense variant T/G snv 10
rs1458974438
STK11
0.807 0.080 19 1206957 missense variant G/A snv 9
rs28929495
EGFR
0.807 0.120 7 55174014 missense variant G/A;C;T snv 9
rs10491121
LOC101927369 ; CCL4
0.882 0.120 17 36102943 upstream gene variant G/A snv 0.32 5
rs10817938
PTCSC2
0.882 0.080 9 97700127 non coding transcript exon variant T/C snv 3.2E-02 5