Disease: Glioma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10069690
TERT
0.595 0.560 5 1279675 intron variant C/T snv 0.36 53
rs10165970
NPAS2
0.708 0.320 2 100840527 intron variant G/A snv 0.16 18
rs1034749666
OLIG2
0.776 0.160 21 33027257 missense variant G/A snv 9
rs10519097
RORA
0.708 0.320 15 60997989 intron variant C/T snv 0.13 18
rs1057519902
H3-3A
0.742 0.160 1 226064451 missense variant G/C snv 16
rs1057519903
H3-3A
0.683 0.080 1 226064434 missense variant A/T snv 28
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs11943456
TMEM165
0.708 0.320 4 55410167 intron variant T/C snv 0.42 18
rs11979158
EGFR
0.882 0.040 7 55091656 intron variant A/G;T snv 0.20 5
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs121913499
IDH1
0.605 0.520 2 208248389 missense variant G/A;C;T snv 51
rs12826786 0.683 0.480 12 53961717 upstream gene variant C/T snv 0.38 26
rs1444669684
CDKN2B-AS1 ; CDKN2A
0.658 0.480 9 21994285 missense variant C/A;T snv 36
rs1553260624
H3-3A
0.763 0.080 1 226064454 missense variant G/A snv 14
rs17024869
NPAS2
0.708 0.320 2 100843581 intron variant T/C snv 8.3E-02 18
rs1800795
IL6-AS1 ; IL6 ; STEAP1B
0.494 0.840 7 22727026 intron variant C/G snv 0.71 140
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs1800925
IL13 ; TH2LCRR
0.627 0.560 5 132657117 non coding transcript exon variant C/G;T snv 37
rs1920116
LRRC31
0.882 0.040 3 169862183 intron variant G/A snv 0.25 5
rs2010963
VEGFA
0.542 0.840 6 43770613 5 prime UTR variant C/G snv 0.68 82
rs2252586 0.882 0.040 7 54911231 intergenic variant C/T snv 0.27 5
rs2279115
BCL2
0.724 0.320 18 63319604 5 prime UTR variant G/A;T snv 18
rs2736100
TERT
0.550 0.880 5 1286401 3 prime UTR variant C/A snv 0.52 83
rs28934575
TP53
0.641 0.400 17 7674230 missense variant C/A;G;T snv 37
rs34180180
MGMT
1.000 0.040 10 129466848 upstream gene variant G/A snv 4.8E-02 2