DisGeNET - a database of gene-disease associations

List of shared variants

Nicotine Dependence, C0028043

Disease: Carcinoma of lung

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs4680	COMT ; MIR4761	0.442	0.920	22	19963748	missense variant	G/A	snv	0.46	0.44	249
rs662	PON1	0.485	0.840	7	95308134	missense variant	T/C	snv	0.38	0.42	157
rs1799971	OPRM1	0.559	0.600	6	154039662	missense variant	A/G	snv	0.19	0.12	95
rs2736100	TERT	0.550	0.880	5	1286401	3 prime UTR variant	C/A	snv		0.52	83
rs1051730	CHRNA3	0.641	0.600	15	78601997	synonymous variant	G/A	snv	0.27	0.26	43
rs401681	CLPTM1L	0.620	0.640	5	1321972	intron variant	C/T	snv		0.48	42
rs16969968	CHRNA5	0.653	0.360	15	78590583	missense variant	G/A	snv	0.26	0.24	37
rs2853676	TERT	0.667	0.560	5	1288432	intron variant	T/A;C	snv			29
rs8034191	HYKK	0.695	0.440	15	78513681	intron variant	T/C	snv		0.27	24
rs1044396	CHRNA4	0.742	0.240	20	63349782	missense variant	G/A;C	snv	0.47; 6.1E-05		17
rs8040868	CHRNA3	0.742	0.240	15	78618839	synonymous variant	T/C	snv	0.35	0.37	17
rs578776	CHRNA3	0.742	0.240	15	78596058	3 prime UTR variant	G/A	snv		0.39	13
rs31489	CLPTM1L	0.763	0.320	5	1342599	intron variant	C/A	snv		0.41	10
rs6495308	CHRNA3	0.851	0.160	15	78615314	intron variant	T/C	snv		0.29	8
rs28399433	CYP2A6	0.827	0.200	19	40850474	intron variant	A/C;G;T	snv	0.10; 4.4E-06		7
rs4105144		0.827	0.160	19	40852719	intron variant	T/C	snv			7
rs1801272	CYP2A6	0.807	0.240	19	40848628	missense variant	A/T	snv	2.0E-02	1.8E-02	6
rs588765	CHRNA5	0.827	0.200	15	78573083	intron variant	T/A;C	snv			6
rs1948	CHRNB4	0.827	0.160	15	78625057	synonymous variant	A/G;T	snv	0.69		5