DisGeNET - a database of gene-disease associations

List of associated variants

Osteopenia, C0029453

Source: ALL

Results per page

Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1064795104	EXOC6B	0.790	0.440	2	72498492	stop gained	A/C	snv			17
rs2230912	P2RX7 ; LOC105370032	0.752	0.280	12	121184393	missense variant	A/G	snv	0.13	0.12	16
rs863225045	ALDH18A1	0.790	0.360	10	95637327	missense variant	C/A;T	snv			15
rs3087456	CIITA ; LOC105371080	0.742	0.480	16	10877045	intron variant	G/A	snv		0.53	14
rs700518	CYP19A1 ; MIR4713HG	0.732	0.320	15	51236915	synonymous variant	T/C	snv	0.43	0.40	13
rs3736228	LRP5	0.752	0.400	11	68433827	missense variant	C/T	snv	0.13	0.11	13
rs139751598	PYCR1	0.851	0.240	17	81934931	missense variant	C/T	snv	2.4E-05	4.2E-05	13
rs876657421	CBS	0.763	0.240	21	43063074	coding sequence variant	-/CCCAGCAAAAGCCCCACCTGGATGATCCACCCCAGTGATCTGCAGAGGGCGCGGCTTCAGGGCTCAAG;CCCAGCAAAAGCCCCACCTGGGTGATCCACCCCAGTGATCTGCAGAGGGCGCGGCTTCAGGGCTCAAG	delins			11
rs72645347	COL1A1	0.790	0.280	17	50196337	missense variant	G/A	snv			10
rs2073617	COLEC10 ; TNFRSF11B	0.776	0.360	8	118952044	upstream gene variant	G/A	snv		0.58	9
rs104893941	MRNIP ; SQSTM1	0.776	0.200	5	179836445	missense variant	C/T	snv	9.8E-04	1.3E-03	9
rs235768	BMP2	0.807	0.160	20	6778468	missense variant	A/G;T	snv	0.67		8
rs751093906	SLC20A2	0.882	0.200	8	42472255	stop gained	G/A;C	snv	4.0E-06		8
rs1555222973	CREB3L1	0.851	0.160	11	46312636	inframe deletion	AAG/-	delins			6
rs1423415130	XYLT2	0.851	0.120	17	50360241	missense variant	G/A	snv		7.0E-06	6
rs4355801		0.882	0.120	8	118911634	regulatory region variant	A/G;T	snv			5
rs1569508922	ALG13	0.882	0.160	X	111681268	missense variant	T/A	snv			5
rs527624522	EXT2	0.925	0.080	11	44107723	missense variant	C/T	snv	6.4E-05	2.1E-05	5
rs121908668	LRP5	0.882	0.240	11	68357673	missense variant	G/T	snv			5
rs1057516036	COL1A2	0.925	0.160	7	94423065	missense variant	G/A	snv			4
rs749292	CYP19A1 ; MIR4713HG	0.851	0.160	15	51266534	intron variant	G/A	snv		0.44	4
rs4988321	LRP5	0.851	0.160	11	68406721	missense variant	G/A;C	snv	3.8E-02		4
rs2273073	BMP2	0.882	0.120	20	6770235	missense variant	T/C;G	snv	2.4E-02		3
rs1057518930	COL1A1	1.000	0.080	17	50197009	splice donor variant	C/G	snv			3
rs9536314	KL	0.925	0.160	13	33054001	missense variant	T/A;G	snv	0.14		3