Disease: Amyotrophic Lateral Sclerosis
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs6265
BDNF ; BDNF-AS
0.436 0.760 11 27658369 missense variant C/T snv 0.19 0.15 272
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs759834365
BDNF-AS ; BDNF
0.448 0.760 11 27658456 missense variant C/T snv 1.2E-05 237
rs1799945
LOC108783645 ; HFE
0.452 0.760 6 26090951 missense variant C/G;T snv 0.11 0.10 226
rs662
PON1
0.485 0.840 7 95308134 missense variant T/C snv 0.38 0.42 157
rs854560
PON1
0.513 0.800 7 95316772 missense variant A/C;G;N;T snv 0.29 113
rs1130409
APEX1
0.555 0.720 14 20456995 missense variant T/A;C;G snv 4.0E-06; 4.0E-06; 0.42 72
rs121912438
SOD1
0.605 0.520 21 31667299 missense variant G/A;C;T snv 1.2E-05; 8.0E-06 58
rs3732378
CX3CR1
0.620 0.720 3 39265671 missense variant G/A snv 0.14 0.12 48
rs3732379
CX3CR1
0.637 0.680 3 39265765 missense variant C/T snv 0.22 0.22 38
rs746682028
BDNF ; BDNF-AS
0.645 0.480 11 27658414 missense variant C/A;T snv 4.0E-06; 4.0E-06 36
rs75932628
LOC105375056 ; TREM2
0.662 0.480 6 41161514 missense variant C/A;T snv 6.8E-05; 2.6E-03 28
rs11558538
LOC107985948 ; HNMT
0.695 0.400 2 138002079 missense variant C/T snv 1.0E-01 8.4E-02 19
rs5848
FAM171A2 ; GRN
0.708 0.120 17 44352876 3 prime UTR variant C/T snv 0.41 17
rs121912443
SOD1
0.732 0.160 21 31663857 missense variant A/G snv 15
rs367543041
TARDBP
0.742 0.200 1 11022553 missense variant G/A;C snv 3.0E-05 15
rs11868035
RAI1 ; SREBF1
0.763 0.200 17 17811787 splice region variant G/A snv 0.45 0.33 14
rs121909329
VCP
0.763 0.200 9 35065363 missense variant C/A;G;T snv 11
rs121909330
VCP
0.752 0.200 9 35065364 missense variant G/A;C;T snv 11
rs121909334
VCP
0.752 0.200 9 35065255 missense variant C/T snv 1.6E-05 10
rs3849942
C9orf72 ; LOC107987057
0.776 0.200 9 27543283 non coding transcript exon variant T/A;C snv 9
rs35801418
LRRK2
0.827 0.120 12 40321114 missense variant A/G snv 7
rs142444896
CHCHD2
0.807 0.120 7 56106409 missense variant G/A snv 9.3E-03 7.5E-03 6
rs17571
CTSD
0.827 0.120 11 1761364 missense variant G/A snv 7.0E-02 6.2E-02 6