DisGeNET - a database of gene-disease associations

List of shared variants

Parkinson Disease, C0030567

Disease: melanoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	272
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs1695	GSTP1	0.457	0.880	11	67585218	missense variant	A/G	snv	0.34	0.36	188
rs1052133	OGG1 ; CAMK1	0.476	0.800	3	9757089	missense variant	C/G	snv	0.27	0.22	147
rs861539	KLC1 ; XRCC3	0.519	0.680	14	103699416	missense variant	G/A	snv	0.29	0.30	104
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs1544410	VDR	0.542	0.760	12	47846052	intron variant	C/A;G;T	snv			78
rs7041	GC	0.576	0.800	4	71752617	missense variant	A/C;T	snv	0.52; 4.0E-06		64
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs1138272	GSTP1	0.611	0.600	11	67586108	missense variant	C/T	snv	5.9E-02	5.5E-02	42
rs10735810	VDR	0.662	0.640	12	47879112	start lost	A/C;G;T	snv			26
rs1805007	MC1R	0.695	0.280	16	89919709	missense variant	C/A;G;T	snv	4.4E-02		25
rs1805008	MC1R	0.732	0.240	16	89919736	missense variant	C/T	snv	4.7E-02	4.8E-02	16
rs885479	MC1R	0.732	0.280	16	89919746	missense variant	G/A	snv	0.15	8.3E-02	16
rs104894104	CDKN2A	0.790	0.160	9	21971019	missense variant	G/A;T	snv			7
rs132985	PLA2G6	0.827	0.120	22	38167464	intron variant	C/T	snv		0.51	5
rs4911414		0.882	0.120	20	34141638	regulatory region variant	T/G	snv		0.73	5
rs2284063	PLA2G6	0.851	0.160	22	38148291	non coding transcript exon variant	A/G	snv		0.40	4
rs387906410	CDKN2A	0.882	0.080	9	21971019	missense variant	GC/AG	mnv			4
rs34090186	MC1R	0.882	0.080	16	89919458	missense variant	G/A	snv	9.6E-04	2.7E-04	3
rs1232525952	MC1R	0.925	0.080	16	89919597	synonymous variant	G/A	snv	8.1E-06		2
rs1340863788	MC1R	0.925	0.080	16	89919595	missense variant	C/A;T	snv			2
rs575031539	CDKN2A	0.925	0.080	9	21971020	missense variant	C/G;T	snv	4.2E-06		2