Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1799964
LTA ; LOC100287329 ; TNF
0.608 0.760 6 31574531 upstream gene variant T/C snv 0.19 47
rs10889677
IL23R
0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 40
rs1137100
LEPR
0.627 0.640 1 65570758 missense variant A/G snv 0.30 0.25 39
rs1061622
TNFRSF1B
0.633 0.760 1 12192898 missense variant T/G snv 0.22 0.22 33
rs1990760
IFIH1
0.672 0.480 2 162267541 missense variant C/T snv 0.50 0.45 33
rs1800682
ACTA2 ; FAS
0.637 0.440 10 88990206 non coding transcript exon variant A/G snv 0.54 32
rs2230926
TNFAIP3
0.662 0.440 6 137874929 missense variant T/C;G snv 4.0E-06; 5.4E-02 27
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 26
rs2104286
IL2RA
0.662 0.440 10 6057082 intron variant T/C snv 0.18 25
rs34536443
TYK2
0.667 0.400 19 10352442 missense variant G/C snv 2.7E-02 2.8E-02 25
rs706778
IL2RA
0.695 0.320 10 6056986 intron variant C/T snv 0.46 19
rs7517847
IL23R ; C1orf141
0.689 0.600 1 67215986 intron variant T/G snv 0.37 19
rs12232497 0.701 0.360 17 39883866 intergenic variant T/C snv 0.35 18
rs4728142 0.732 0.320 7 128933913 upstream gene variant G/A snv 0.38 18
rs10434
VEGFA
0.701 0.480 6 43785475 3 prime UTR variant A/G snv 0.59 17
rs2111485 0.724 0.280 2 162254026 regulatory region variant A/G snv 0.46 17
rs4625
DAG1
0.716 0.280 3 49534707 3 prime UTR variant A/G snv 0.30 17
rs4676410
GPR35
0.716 0.240 2 240624322 intron variant G/A snv 0.26 17
rs9808753
IFNGR2
0.701 0.400 21 33415005 missense variant A/G snv 0.20 0.18 17
rs1689510
SUOX
0.724 0.240 12 56002984 non coding transcript exon variant G/C snv 0.25 16
rs4246905
TNFSF15
0.716 0.400 9 114790969 missense variant T/A;C snv 0.76 16
rs4810485
CD40
0.732 0.480 20 46119308 intron variant T/A;G snv 16
rs602662
LOC105447645 ; FUT2
0.716 0.280 19 48703728 missense variant G/A snv 0.40 0.47 16
rs7725052 0.716 0.240 5 40487168 intron variant C/T snv 0.52 16
rs7731626
ANKRD55
0.716 0.240 5 56148856 intron variant G/A snv 0.30 16