DisGeNET - a database of gene-disease associations

List of associated variants

Schizophrenia, C0036341

Source: CURATED ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	34
rs1799945	LOC108783645 ; HFE	0.452	0.760	6	26090951	missense variant	C/G;T	snv	0.11	0.10	31
rs13107325	SLC39A8	0.776	0.520	4	102267552	missense variant	C/A;T	snv	4.0E-06; 4.5E-02		30
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	29
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	25
rs115707823		0.701	0.320	6	30374976	intergenic variant	G/A	snv			19
rs7903146	TCF7L2	0.554	0.680	10	112998590	intron variant	C/G;T	snv			19
rs8321	ZNRD1	0.742	0.320	6	30064745	3 prime UTR variant	A/C	snv	5.4E-02	5.9E-02	15
rs12914385	CHRNA3	0.790	0.160	15	78606381	intron variant	C/A;T	snv			13
rs11191580	NT5C2	0.827	0.040	10	103146454	intron variant	T/C	snv		7.9E-02	12
rs2228145	IL6R	0.602	0.720	1	154454494	missense variant	A/C;T	snv	0.38; 1.2E-05		12
rs1051730	CHRNA3	0.641	0.600	15	78601997	synonymous variant	G/A	snv	0.27	0.26	11
rs3782886	BRAP	0.724	0.480	12	111672685	synonymous variant	T/C	snv	1.9E-02	5.9E-03	11
rs1480380	HLA-DMB	0.763	0.360	6	32945469	intron variant	C/T	snv		0.11	10
rs1800469	B9D2 ; TGFB1	0.547	0.760	19	41354391	intron variant	A/G	snv		0.69	10
rs886424	LINC00243	0.776	0.320	6	30814225	non coding transcript exon variant	C/T	snv	7.1E-02	8.7E-02	10
rs17782313		0.683	0.480	18	60183864	intergenic variant	T/C	snv		0.24	9
rs2070600	AGER	0.561	0.760	6	32183666	missense variant	C/T	snv	5.3E-02	3.6E-02	9
rs8042374	CHRNA3	0.807	0.200	15	78615690	intron variant	A/G	snv		0.29	9
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	8
rs9930506	FTO	0.776	0.360	16	53796553	intron variant	A/G	snv		0.36	8
rs1006737	CACNA1C	0.695	0.120	12	2236129	intron variant	G/A	snv		0.36	7
rs1057518913	EHMT1	0.851	0.320	9	137762822	splice donor variant	T/C	snv			7
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	7
rs2710323	ITIH1	0.851	0.080	3	52781889	intron variant	T/C	snv	0.49	0.54	7