DisGeNET - a database of gene-disease associations

List of associated variants

Schizophrenia, C0036341

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1801133	MTHFR	0.472	0.880	1	11796321	missense variant	G/A	snv	0.31	0.27	174
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1801131	MTHFR	0.535	0.840	1	11794419	missense variant	T/G	snv	0.29	0.26	93
rs1137101	LEPR	0.554	0.760	1	65592830	missense variant	A/G	snv	0.51	0.50	77
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	72
rs2228145	IL6R	0.602	0.720	1	154454494	missense variant	A/C;T	snv	0.38; 1.2E-05		57
rs324420	FAAH	0.637	0.440	1	46405089	missense variant	C/A	snv	0.24	0.26	48
rs1205	CRP	0.602	0.680	1	159712443	3 prime UTR variant	C/T	snv		0.30	46
rs1061622	TNFRSF1B	0.633	0.760	1	12192898	missense variant	T/G	snv	0.22	0.22	33
rs4950928	CHI3L1	0.653	0.560	1	203186754	upstream gene variant	G/A;C;T	snv			33
rs1800947	CRP	0.683	0.440	1	159713648	splice region variant	C/A;G;T	snv	4.4E-05; 5.1E-02; 4.0E-06		28
rs9651118	MTHFR	0.683	0.480	1	11802157	intron variant	T/C	snv		0.18	20
rs1805054	HTR6	0.708	0.200	1	19666020	synonymous variant	C/T	snv	0.15; 8.0E-06	0.16	17
rs2501432	CNR2	0.716	0.480	1	23875430	missense variant	T/C;G	snv	0.62		16
rs4606	RGS2	0.752	0.120	1	192812042	3 prime UTR variant	C/G;T	snv			16
rs1625579	MIR137HG	0.763	0.160	1	98037378	intron variant	G/T	snv		0.78	14
rs821616	DISC1 ; TSNAX-DISC1	0.752	0.200	1	232008852	missense variant	A/T	snv	0.26	0.29	13
rs1200746244	MTHFR	0.807	0.080	1	11801287	missense variant	C/T	snv	4.0E-06	7.0E-06	11
rs4537545	IL6R	0.790	0.160	1	154446403	intron variant	C/T	snv		0.48	11
rs1417938	CRP	0.776	0.320	1	159714396	intron variant	T/A;C	snv	0.28		10
rs5174	LRP8	0.776	0.240	1	53247055	missense variant	C/T	snv	0.29	0.28	10
rs2271933	HCRTR1	0.807	0.080	1	31626924	missense variant	A/G	snv	0.56	0.50	9